Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   109337
Name   oriT_TC12-54|P7 in_silico
Organism   Pseudosulfitobacter pseudonitzschiae strain TC12-54
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP086815 (15648..15679 [+], 32 nt)
oriT length   32 nt
IRs (inverted repeats)      3..10, 14..21  (ACATTGTC..GACAATGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 32 nt

>oriT_TC12-54|P7
GCACATTGTCGAAGACAATGTATAAGCGCGCA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP

ID   6831 GenBank   WP_229942714
Name   t4cp2_LOE27_RS24015_TC12-54|P7 insolico UniProt ID   _
Length   602 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 602 a.a.        Molecular weight: 65969.08 Da        Isoelectric Point: 9.8247

>WP_229942714.1 type IV secretory system conjugative DNA transfer family protein [Pseudosulfitobacter pseudonitzschiae]
MIGVVILAAAALVFAPQAVAIYPVTTYAFPIIAVAVILDTLGTAAERHRAPLKLLAWVCLCAATLTALTP
LRGPLSDILATVQAWTGAGWPLPRAIWEGLKGLARYSDPQKQAMAISFALGAFGVAVAVSTPLMAVFNPR
IGRNRKSRTGPWQAGWMDPRDVAQLKRNKTGLPLALHKGKLLRYVKNDAKGWRGGHHLVVSGTRGGKGVS
AVIPAILDHQGPVVVLDIKGENFAVTRRHREELGRKVAVLNPFGLVEDGKDQFNPLDYIRPHELARDVAL
VADGLVKPEQGDGAHFSEMARQLVAAAIEVIVTQEEPNRRNLIAVADLLLSANLDGTLEAWAENSDLVGH
RPAQTAATILRAGDRERGSIQTAVSKAFEWMQSDNMRHFLAGSSFHMDDLLDDRVDLFIAVPLDQVDKQA
IFMRLFINLVLGTVVRQDGRRKVKAPILLVLDEFVRMGRMEQIMNIANVAAGAGVEALFVTQDTGQVEKA
YGPNDARSIFGSCITKRVFNLNDIETAEWAARHLGESTVYSQQIREGKAPNEGRDFSYSEQRQKLMTAEQ
ITGMKADDLLLLVGNRNPLKAKQNVYFKSRAYRGRFDQNPLN

  Protein domains


Predicted by InterproScan.

Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf)

(169-592)

  Protein structure



No available structure.




Host bacterium

ID   9772 GenBank   NZ_CP086815
Plasmid name   TC12-54|P7 Incompatibility group   -
Plasmid size   37721 bp Coordinate of oriT [Strand]   15648..15679 [+]
Host baterium   Pseudosulfitobacter pseudonitzschiae strain TC12-54

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -