Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   109334
Name   oriT_SC1-34|P9 in_silico
Organism   Pseudosulfitobacter pseudonitzschiae strain SC1-34
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP086918 (18871..18902 [+], 32 nt)
oriT length   32 nt
IRs (inverted repeats)      3..10, 14..21  (ACATTGTC..GACAATGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 32 nt

>oriT_SC1-34|P9
GCACATTGTCGAAGACAATGTATAAGCGCGCA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP

ID   6829 GenBank   WP_229942714
Name   t4cp2_LOE18_RS24725_SC1-34|P9 insolico UniProt ID   _
Length   602 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 602 a.a.        Molecular weight: 65969.08 Da        Isoelectric Point: 9.8247

>WP_229942714.1 type IV secretory system conjugative DNA transfer family protein [Pseudosulfitobacter pseudonitzschiae]
MIGVVILAAAALVFAPQAVAIYPVTTYAFPIIAVAVILDTLGTAAERHRAPLKLLAWVCLCAATLTALTP
LRGPLSDILATVQAWTGAGWPLPRAIWEGLKGLARYSDPQKQAMAISFALGAFGVAVAVSTPLMAVFNPR
IGRNRKSRTGPWQAGWMDPRDVAQLKRNKTGLPLALHKGKLLRYVKNDAKGWRGGHHLVVSGTRGGKGVS
AVIPAILDHQGPVVVLDIKGENFAVTRRHREELGRKVAVLNPFGLVEDGKDQFNPLDYIRPHELARDVAL
VADGLVKPEQGDGAHFSEMARQLVAAAIEVIVTQEEPNRRNLIAVADLLLSANLDGTLEAWAENSDLVGH
RPAQTAATILRAGDRERGSIQTAVSKAFEWMQSDNMRHFLAGSSFHMDDLLDDRVDLFIAVPLDQVDKQA
IFMRLFINLVLGTVVRQDGRRKVKAPILLVLDEFVRMGRMEQIMNIANVAAGAGVEALFVTQDTGQVEKA
YGPNDARSIFGSCITKRVFNLNDIETAEWAARHLGESTVYSQQIREGKAPNEGRDFSYSEQRQKLMTAEQ
ITGMKADDLLLLVGNRNPLKAKQNVYFKSRAYRGRFDQNPLN

  Protein domains


Predicted by InterproScan.

Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf)

(169-592)

  Protein structure



No available structure.




Host bacterium

ID   9769 GenBank   NZ_CP086918
Plasmid name   SC1-34|P9 Incompatibility group   -
Plasmid size   37758 bp Coordinate of oriT [Strand]   18871..18902 [+]
Host baterium   Pseudosulfitobacter pseudonitzschiae strain SC1-34

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -