Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 109333 |
| Name | oriT_TT37-74|P10  |
| Organism | Pseudosulfitobacter pseudonitzschiae strain TT37-74 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP086774 (142..173 [-], 32 nt) |
| oriT length | 32 nt |
| IRs (inverted repeats) | 3..10, 14..21 (ACATTGTC..GACAATGT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 32 nt
>oriT_TT37-74|P10
GCACATTGTCGAAGACAATGTATAAGCGCGCA
GCACATTGTCGAAGACAATGTATAAGCGCGCA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 6259 | GenBank | WP_224557662 |
| Name | mobQ_LOE41_RS24865_TT37-74|P10 |
UniProt ID | _ |
| Length | 427 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 427 a.a. Molecular weight: 48285.83 Da Isoelectric Point: 9.4406
>WP_224557662.1 MobQ family relaxase [Pseudosulfitobacter pseudonitzschiae]
MAIYHLSAKVISRAGGRSSVAAAAYRTAGRLRDDRQGLEHDYSRKGGVVHSEIMAPDNAPDWMRDRDQLW
NAVEAVEKRRDAQLAREIEVALPRELDRGARLELLRGFVQREFVDRGMIADVAIHEGKARDGQSQPHAHV
MLTMRELTGEGFGKKDRSWNAPDLLMGWRAAWARDANTALERAGRSERIDHRSLDVQRAEAEQQAERARG
GGQEELALEHEKKVIELSREAEPKIGPSANAQEKRGIVTERGEAFRAAQARNAQRQELGWRQLELRFELM
ERGRAFIATARERLDQLWGRAEAAMSRIRERVMGEVERPQTGAPRGDMDARRAAVLGRDVDRPEVQAPDV
GRERVVPDDPIRERLNAILGRGRDIGQERDAAAVERDIAARDSEGRDQGRRDDILGRGRDTASERGQGRD
RDRDRER
MAIYHLSAKVISRAGGRSSVAAAAYRTAGRLRDDRQGLEHDYSRKGGVVHSEIMAPDNAPDWMRDRDQLW
NAVEAVEKRRDAQLAREIEVALPRELDRGARLELLRGFVQREFVDRGMIADVAIHEGKARDGQSQPHAHV
MLTMRELTGEGFGKKDRSWNAPDLLMGWRAAWARDANTALERAGRSERIDHRSLDVQRAEAEQQAERARG
GGQEELALEHEKKVIELSREAEPKIGPSANAQEKRGIVTERGEAFRAAQARNAQRQELGWRQLELRFELM
ERGRAFIATARERLDQLWGRAEAAMSRIRERVMGEVERPQTGAPRGDMDARRAAVLGRDVDRPEVQAPDV
GRERVVPDDPIRERLNAILGRGRDIGQERDAAAVERDIAARDSEGRDQGRRDDILGRGRDTASERGQGRD
RDRDRER
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 6828 | GenBank | WP_224557659 |
| Name | t4cp2_LOE41_RS24810_TT37-74|P10 |
UniProt ID | _ |
| Length | 614 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 614 a.a. Molecular weight: 67438.85 Da Isoelectric Point: 9.8245
>WP_224557659.1 type IV secretory system conjugative DNA transfer family protein [Pseudosulfitobacter pseudonitzschiae]
MSFVLEARHWVIMIGVVILAAAALVFAPQAVAIYPVTTYAFPIIAVAVILDTLGTAAERHRAPLKLLAWV
CLCAATLTALTPLRGPLSDILATVQAWTGAGWPLPRAIWEGLKGLARYSDPQKQAMAISFALGAFGVAVA
VSTPLMAVFNPRIGRNRKSRTGPWQAGWMDPRDVAQLKRNKTGLPLALHKGKLLRYVKNDAKGWRGGHHL
VVSGTRGGKGVSAVIPAILDHQGPVVVLDIKGENFAVTRRHREELGRKVAVLNPFGLVEDGKDQFNPLDY
IRPHELARDVALVADGLVKPEQGDGAHFSEMARQLVAAAIEVIVTQEEPNRRNLIAVADLLLSANLDGTL
EAWAENSDLVGHRPAQTAATILRAGDRERGSIQTAVSKAFEWMQSDNMRHFLAGSSFHMDDLLDDRVDLF
IAVPLDQVDKQAIFMRLFINLVLGTVVRQDGRRKVKAPILLVLDEFVRMGRMEQIMNIANVAAGAGVEAL
FVTQDTGQVEKAYGPNDARSIFGSCITKRVFNLNDIETAEWAARHLGESTVYSQQIREGKAPNEGRDFSY
SEQRQKLMTAEQITGMKADDLLLLVGNRNPLKAKQNVYFKSRAYRGRFDQNPLN
MSFVLEARHWVIMIGVVILAAAALVFAPQAVAIYPVTTYAFPIIAVAVILDTLGTAAERHRAPLKLLAWV
CLCAATLTALTPLRGPLSDILATVQAWTGAGWPLPRAIWEGLKGLARYSDPQKQAMAISFALGAFGVAVA
VSTPLMAVFNPRIGRNRKSRTGPWQAGWMDPRDVAQLKRNKTGLPLALHKGKLLRYVKNDAKGWRGGHHL
VVSGTRGGKGVSAVIPAILDHQGPVVVLDIKGENFAVTRRHREELGRKVAVLNPFGLVEDGKDQFNPLDY
IRPHELARDVALVADGLVKPEQGDGAHFSEMARQLVAAAIEVIVTQEEPNRRNLIAVADLLLSANLDGTL
EAWAENSDLVGHRPAQTAATILRAGDRERGSIQTAVSKAFEWMQSDNMRHFLAGSSFHMDDLLDDRVDLF
IAVPLDQVDKQAIFMRLFINLVLGTVVRQDGRRKVKAPILLVLDEFVRMGRMEQIMNIANVAAGAGVEAL
FVTQDTGQVEKAYGPNDARSIFGSCITKRVFNLNDIETAEWAARHLGESTVYSQQIREGKAPNEGRDFSY
SEQRQKLMTAEQITGMKADDLLLLVGNRNPLKAKQNVYFKSRAYRGRFDQNPLN
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 9768 | GenBank | NZ_CP086774 |
| Plasmid name | TT37-74|P10 | Incompatibility group | - |
| Plasmid size | 41460 bp | Coordinate of oriT [Strand] | 142..173 [-] |
| Host baterium | Pseudosulfitobacter pseudonitzschiae strain TT37-74 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |