Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   109330
Name   oriT_SC1-32|P1 in_silico
Organism   Pseudosulfitobacter pseudonitzschiae strain SC1-32
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP086920 (15767..15798 [+], 32 nt)
oriT length   32 nt
IRs (inverted repeats)      3..10, 14..21  (ACATTGTC..GACAATGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 32 nt

>oriT_SC1-32|P1
GCACATTGTCGAAGACAATGTATAAGCGCGCA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP

ID   6825 GenBank   WP_229943993
Name   t4cp2_LOE17_RS19340_SC1-32|P1 insolico UniProt ID   _
Length   598 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 598 a.a.        Molecular weight: 65600.61 Da        Isoelectric Point: 9.8247

>WP_229943993.1 type IV secretory system conjugative DNA transfer family protein [Pseudosulfitobacter pseudonitzschiae]
MILAAAALVFAPQAVAIYPVTTYAFPIIAVAVILDTLGTAAERHRAPLKLLAWVCLCAATLTALTPLRGP
LSDILATVQAWTGAGWPLPRAIWEGLKGLARYSDPQKQAMAISFALGAFGVAVAVSTPLMAVFNPRIGRN
RKSRTGPWQAGWMDPRDVAQLKRNKTGLPLALHKGKLLRYVKNDAKGWRGGHHLVVSGTRGGKGVSAVIP
AILDHQGPVVVLDIKGENFAVTRRHREELGRKVAVLNPFGLVEDGKDQFNPLDYIRPHELARDVALVADG
LVKPEQGDGAHFSEMARQLVAAAIEVIVTQEEPNRRNLIAVADLLLSANLDGTLEAWAENSDLVGHRPAQ
TAATILRAGDRERGSIQTAVSKAFEWMQSDNMRHFLAGSSFHMDDLLDDRVDLFIAVPLDQVDKQAIFMR
LFINLVLGTVVRQDGRRKVKAPILLVLDEFVRMGRMEQIMNIANVAAGAGVEALFVTQDTGQVEKAYGPN
DARSIFGSCITKRVFNLNDIETAEWAARHLGESTVYSQQIREGKAPNEGRDFSYSEQRQKLMTAEQITGM
KADDLLLLVGNRNPLKAKQNVYFKSRAYRGRFDQNPLN

  Protein domains


Predicted by InterproScan.

Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf)

(165-588)

  Protein structure



No available structure.




Host bacterium

ID   9765 GenBank   NZ_CP086920
Plasmid name   SC1-32|P1 Incompatibility group   -
Plasmid size   37726 bp Coordinate of oriT [Strand]   15767..15798 [+]
Host baterium   Pseudosulfitobacter pseudonitzschiae strain SC1-32

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -