Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 109328 |
Name | oriT_SC1-30|P5 |
Organism | Pseudosulfitobacter pseudonitzschiae strain SC1-30 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_CP086935 (23253..23284 [+], 32 nt) |
oriT length | 32 nt |
IRs (inverted repeats) | 3..10, 14..21 (ACATTGTC..GACAATGT) |
Location of nic site | _ |
Conserved sequence flanking the nic site |
_ |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 32 nt
>oriT_SC1-30|P5
GCACATTGTCGAAGACAATGTATAAGCGCGCA
GCACATTGTCGAAGACAATGTATAAGCGCGCA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileT4CP
ID | 6823 | GenBank | WP_224557659 |
Name | t4cp2_LOE16_RS22065_SC1-30|P5 | UniProt ID | _ |
Length | 614 a.a. | PDB ID | _ |
Note | Predicted by oriTfinder 2.0 |
T4CP protein sequence
Download Length: 614 a.a. Molecular weight: 67438.85 Da Isoelectric Point: 9.8245
>WP_224557659.1 type IV secretory system conjugative DNA transfer family protein [Pseudosulfitobacter pseudonitzschiae]
MSFVLEARHWVIMIGVVILAAAALVFAPQAVAIYPVTTYAFPIIAVAVILDTLGTAAERHRAPLKLLAWV
CLCAATLTALTPLRGPLSDILATVQAWTGAGWPLPRAIWEGLKGLARYSDPQKQAMAISFALGAFGVAVA
VSTPLMAVFNPRIGRNRKSRTGPWQAGWMDPRDVAQLKRNKTGLPLALHKGKLLRYVKNDAKGWRGGHHL
VVSGTRGGKGVSAVIPAILDHQGPVVVLDIKGENFAVTRRHREELGRKVAVLNPFGLVEDGKDQFNPLDY
IRPHELARDVALVADGLVKPEQGDGAHFSEMARQLVAAAIEVIVTQEEPNRRNLIAVADLLLSANLDGTL
EAWAENSDLVGHRPAQTAATILRAGDRERGSIQTAVSKAFEWMQSDNMRHFLAGSSFHMDDLLDDRVDLF
IAVPLDQVDKQAIFMRLFINLVLGTVVRQDGRRKVKAPILLVLDEFVRMGRMEQIMNIANVAAGAGVEAL
FVTQDTGQVEKAYGPNDARSIFGSCITKRVFNLNDIETAEWAARHLGESTVYSQQIREGKAPNEGRDFSY
SEQRQKLMTAEQITGMKADDLLLLVGNRNPLKAKQNVYFKSRAYRGRFDQNPLN
MSFVLEARHWVIMIGVVILAAAALVFAPQAVAIYPVTTYAFPIIAVAVILDTLGTAAERHRAPLKLLAWV
CLCAATLTALTPLRGPLSDILATVQAWTGAGWPLPRAIWEGLKGLARYSDPQKQAMAISFALGAFGVAVA
VSTPLMAVFNPRIGRNRKSRTGPWQAGWMDPRDVAQLKRNKTGLPLALHKGKLLRYVKNDAKGWRGGHHL
VVSGTRGGKGVSAVIPAILDHQGPVVVLDIKGENFAVTRRHREELGRKVAVLNPFGLVEDGKDQFNPLDY
IRPHELARDVALVADGLVKPEQGDGAHFSEMARQLVAAAIEVIVTQEEPNRRNLIAVADLLLSANLDGTL
EAWAENSDLVGHRPAQTAATILRAGDRERGSIQTAVSKAFEWMQSDNMRHFLAGSSFHMDDLLDDRVDLF
IAVPLDQVDKQAIFMRLFINLVLGTVVRQDGRRKVKAPILLVLDEFVRMGRMEQIMNIANVAAGAGVEAL
FVTQDTGQVEKAYGPNDARSIFGSCITKRVFNLNDIETAEWAARHLGESTVYSQQIREGKAPNEGRDFSY
SEQRQKLMTAEQITGMKADDLLLLVGNRNPLKAKQNVYFKSRAYRGRFDQNPLN
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
ID | 9763 | GenBank | NZ_CP086935 |
Plasmid name | SC1-30|P5 | Incompatibility group | - |
Plasmid size | 37724 bp | Coordinate of oriT [Strand] | 23253..23284 [+] |
Host baterium | Pseudosulfitobacter pseudonitzschiae strain SC1-30 |
Cargo genes
Drug resistance gene | - |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |