Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 109323 |
| Name | oriT_SC1-29|P2  |
| Organism | Pseudosulfitobacter pseudonitzschiae strain SC1-29 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP086940 (15..34 [-], 20 nt) |
| oriT length | 20 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 20 nt
>oriT_SC1-29|P2
GTTTGCATAAGTGCGCCCTT
GTTTGCATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 6255 | GenBank | WP_224557625 |
| Name | mobQ_LOE15_RS19445_SC1-29|P2 |
UniProt ID | _ |
| Length | 447 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 447 a.a. Molecular weight: 50653.05 Da Isoelectric Point: 7.6474
>WP_224557625.1 MobQ family relaxase [Pseudosulfitobacter pseudonitzschiae]
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKQGIEETFILTPKDAPDWASDRSRLW
NEAEASETRRNSVTAREWELALPSEISAEARSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEAGGFTAKTRVLDSAKTGGVEIEQMRGLWAELQNRALERVGEVERVDHRSLEKQRETALDRGD
KLSAEELDRDPELKLGPAANSMERRAKAVAEREGREYVPVTERGAVVHAARQARAAFREMRERLDIARET
YGIEREAGQGRVSAGLAALRAATAKDRDGRTSDDIRERLSQVVGRSRDQDDTPKPEGRNYARERLKEIME
KDAGRDGQAAVHKLDGYSENDLGEEAARPSRTPAQRQRQGRSEDIAREDRKPSVNERLKDVLNKPRERLE
IKDERKQDKDQEVEKERDIDRDPGLSH
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKQGIEETFILTPKDAPDWASDRSRLW
NEAEASETRRNSVTAREWELALPSEISAEARSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEAGGFTAKTRVLDSAKTGGVEIEQMRGLWAELQNRALERVGEVERVDHRSLEKQRETALDRGD
KLSAEELDRDPELKLGPAANSMERRAKAVAEREGREYVPVTERGAVVHAARQARAAFREMRERLDIARET
YGIEREAGQGRVSAGLAALRAATAKDRDGRTSDDIRERLSQVVGRSRDQDDTPKPEGRNYARERLKEIME
KDAGRDGQAAVHKLDGYSENDLGEEAARPSRTPAQRQRQGRSEDIAREDRKPSVNERLKDVLNKPRERLE
IKDERKQDKDQEVEKERDIDRDPGLSH
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 6819 | GenBank | WP_229940897 |
| Name | t4cp2_LOE15_RS19610_SC1-29|P2 |
UniProt ID | _ |
| Length | 548 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 548 a.a. Molecular weight: 60396.28 Da Isoelectric Point: 6.7791
>WP_229940897.1 type IV secretory system conjugative DNA transfer family protein [Pseudosulfitobacter pseudonitzschiae]
MRGVMLVFGGLFRFFGRLIFTPILLGWMIGALVATPFVFAFFDQPPGESAWQWLVFGPLMFVGAVFGFQY
WRMASGADAFFGLTGDSHGSARFANRKELKKLQGEEGLLIGRNPHTGRLLRYDGPAHLITLAPTRAGKGV
GTVIPNLLAAERSVLVIDPKGENARIAGEARRRFGTVHVLDPFEVSGMPSAAYNPLDRLTPDSLDLGEDV
ASLTEALVMDPPGQVTEAHWNEEAKAILGGLIMFCVCHEDRDRRTLATVREYLTLPPEKLRALLELMQDS
DAAGGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIAKVLSRSDFHFSDLRQRIASVFLVLPPNR
MDAYSRWLRLLVSQALQDIARDAEASVRPQSGLVGAQGGTQRLKTPTLFLLDEFAALGRLEAVERAMGLM
AGYGLQLWPILQDMSQLKDLYGERAGTFIANAGVQQVFGVNDFETAKWLSQMMGQETAGFQTDSFKPGDG
PSFSNNLTGRDLLTPDEIMQLRPENQLLRVQGQATAVAQKLRYYADPEFKGLFVPQDQ
MRGVMLVFGGLFRFFGRLIFTPILLGWMIGALVATPFVFAFFDQPPGESAWQWLVFGPLMFVGAVFGFQY
WRMASGADAFFGLTGDSHGSARFANRKELKKLQGEEGLLIGRNPHTGRLLRYDGPAHLITLAPTRAGKGV
GTVIPNLLAAERSVLVIDPKGENARIAGEARRRFGTVHVLDPFEVSGMPSAAYNPLDRLTPDSLDLGEDV
ASLTEALVMDPPGQVTEAHWNEEAKAILGGLIMFCVCHEDRDRRTLATVREYLTLPPEKLRALLELMQDS
DAAGGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIAKVLSRSDFHFSDLRQRIASVFLVLPPNR
MDAYSRWLRLLVSQALQDIARDAEASVRPQSGLVGAQGGTQRLKTPTLFLLDEFAALGRLEAVERAMGLM
AGYGLQLWPILQDMSQLKDLYGERAGTFIANAGVQQVFGVNDFETAKWLSQMMGQETAGFQTDSFKPGDG
PSFSNNLTGRDLLTPDEIMQLRPENQLLRVQGQATAVAQKLRYYADPEFKGLFVPQDQ
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 9758 | GenBank | NZ_CP086940 |
| Plasmid name | SC1-29|P2 | Incompatibility group | - |
| Plasmid size | 35898 bp | Coordinate of oriT [Strand] | 15..34 [-] |
| Host baterium | Pseudosulfitobacter pseudonitzschiae strain SC1-29 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |