Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 109322 |
| Name | oriT_SC1-29|P1  |
| Organism | Pseudosulfitobacter pseudonitzschiae strain SC1-29 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP086939 (17615..17646 [-], 32 nt) |
| oriT length | 32 nt |
| IRs (inverted repeats) | 3..10, 14..21 (ACATTGTC..GACAATGT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 32 nt
>oriT_SC1-29|P1
GCACATTGTCGAAGACAATGTATAAGCGCGCA
GCACATTGTCGAAGACAATGTATAAGCGCGCA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
T4CP
| ID | 6818 | GenBank | WP_229943993 |
| Name | t4cp2_LOE15_RS19340_SC1-29|P1 |
UniProt ID | _ |
| Length | 598 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 598 a.a. Molecular weight: 65600.61 Da Isoelectric Point: 9.8247
>WP_229943993.1 type IV secretory system conjugative DNA transfer family protein [Pseudosulfitobacter pseudonitzschiae]
MILAAAALVFAPQAVAIYPVTTYAFPIIAVAVILDTLGTAAERHRAPLKLLAWVCLCAATLTALTPLRGP
LSDILATVQAWTGAGWPLPRAIWEGLKGLARYSDPQKQAMAISFALGAFGVAVAVSTPLMAVFNPRIGRN
RKSRTGPWQAGWMDPRDVAQLKRNKTGLPLALHKGKLLRYVKNDAKGWRGGHHLVVSGTRGGKGVSAVIP
AILDHQGPVVVLDIKGENFAVTRRHREELGRKVAVLNPFGLVEDGKDQFNPLDYIRPHELARDVALVADG
LVKPEQGDGAHFSEMARQLVAAAIEVIVTQEEPNRRNLIAVADLLLSANLDGTLEAWAENSDLVGHRPAQ
TAATILRAGDRERGSIQTAVSKAFEWMQSDNMRHFLAGSSFHMDDLLDDRVDLFIAVPLDQVDKQAIFMR
LFINLVLGTVVRQDGRRKVKAPILLVLDEFVRMGRMEQIMNIANVAAGAGVEALFVTQDTGQVEKAYGPN
DARSIFGSCITKRVFNLNDIETAEWAARHLGESTVYSQQIREGKAPNEGRDFSYSEQRQKLMTAEQITGM
KADDLLLLVGNRNPLKAKQNVYFKSRAYRGRFDQNPLN
MILAAAALVFAPQAVAIYPVTTYAFPIIAVAVILDTLGTAAERHRAPLKLLAWVCLCAATLTALTPLRGP
LSDILATVQAWTGAGWPLPRAIWEGLKGLARYSDPQKQAMAISFALGAFGVAVAVSTPLMAVFNPRIGRN
RKSRTGPWQAGWMDPRDVAQLKRNKTGLPLALHKGKLLRYVKNDAKGWRGGHHLVVSGTRGGKGVSAVIP
AILDHQGPVVVLDIKGENFAVTRRHREELGRKVAVLNPFGLVEDGKDQFNPLDYIRPHELARDVALVADG
LVKPEQGDGAHFSEMARQLVAAAIEVIVTQEEPNRRNLIAVADLLLSANLDGTLEAWAENSDLVGHRPAQ
TAATILRAGDRERGSIQTAVSKAFEWMQSDNMRHFLAGSSFHMDDLLDDRVDLFIAVPLDQVDKQAIFMR
LFINLVLGTVVRQDGRRKVKAPILLVLDEFVRMGRMEQIMNIANVAAGAGVEALFVTQDTGQVEKAYGPN
DARSIFGSCITKRVFNLNDIETAEWAARHLGESTVYSQQIREGKAPNEGRDFSYSEQRQKLMTAEQITGM
KADDLLLLVGNRNPLKAKQNVYFKSRAYRGRFDQNPLN
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 9757 | GenBank | NZ_CP086939 |
| Plasmid name | SC1-29|P1 | Incompatibility group | - |
| Plasmid size | 37724 bp | Coordinate of oriT [Strand] | 17615..17646 [-] |
| Host baterium | Pseudosulfitobacter pseudonitzschiae strain SC1-29 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |