Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 109315
• Name: oriT_H46|unnamed6
• Organism: Pseudosulfitobacter pseudonitzschiae strain H46
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP054605 (11680..11711 [-], 32 nt)
• oriT length: 32 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 32 nt

>oriT_H46|unnamed6
GCACGTTGTCGAAGACAATGTATAAGCGCGCA

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_HT745_RS22300_H46|unnamed6

• ID: 6251
• GenBank: WP_081855499
• Name: mobQ_HT745_RS22300_H46|unnamed6
• UniProt ID: _
• Length: 427 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 427 a.a.
• Molecular weight: 48303.81 Da
• Isoelectric Point: 6.7233

>WP_081855499.1 MobQ family relaxase [Pseudosulfitobacter pseudonitzschiae]
MAIYHLSAKVISRAGGRSSVAAAAYRTAGRLRDERQGLEHDYSRKGGVVHSEIMAPENAPDWMCDRDQLW
NAVEAVEKRRDAQLAREIEVALPRELDRGERLELLRGFVQREFVDRGMIADVAVHEGKARDGQGQPHAHV
MLTMRELTGEGFGKKDRSWNAPDLLMGWREAWARDANTALERAGRSERIDHRSLDLQRTEAEQQVERARG
GGQEELALEHEKKVVELSREPEPKIGPSANAQEKRGIVTERGDAFRATQARNAQRLELGWRQLELRLELM
ERGRAFIATARERLDQLWGRAEAAMSRIKERVMGEVERPQAGAERGDMDARRAAVLGRDVDRAEVQAPDV
GRERATPDDPDRERLNAILGRGRDIGLERDAAAVERDIVARDGEGRDQGRRDDILGRGRDNASERGQGRD
RDRDRER

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (17-203)

Protein structure

No available structure.

T4CP

t4cp2_HT745_RS22290_H46|unnamed6

• ID: 6814
• GenBank: WP_051694707
• Name: t4cp2_HT745_RS22290_H46|unnamed6
• UniProt ID: _
• Length: 614 a.a.
• PDB ID: _
• Note: Predicted by oriTfinder 2.0

T4CP protein sequence

• Length: 614 a.a.
• Molecular weight: 67527.10 Da
• Isoelectric Point: 9.9008

>WP_051694707.1 type IV secretory system conjugative DNA transfer family protein [Pseudosulfitobacter pseudonitzschiae]
MSFVLEARHWVIMIGAVILAAAAMILAPQAVAIYPMTTYAFPIIAVATIFDTLGTTAERLRWSLKLLAWV
CLCAAALTALTPLRGPLSDILATIQAWTGAGWPLPRAIWEGLKGLARYSDPQKQAMAISFALGAFGVAVA
VSTPLVAIFNPRIGRNRKSRTGPWQAGWMDPRDVAQLKRNKTGLPLALHKGKLLRYVKNGAKGWRGGHHL
VVSGTRGGKGVSAVIPAILDHQGPVVVLDIKGENFAVTRRHREELGRKVAVLNPFGLVEDGKDQFNPLDY
IRPHELARDVALVADGLVKPEQGDGAHFSEMARQLVAAAIEVIVTQEEPNRRNLIAVADLLLTANLDGTL
EAWAENADLVGHRPAQTAATILRAGDRERGSIQTAVSKAFEWMQSDNMRHFLAGSSFRMDDLLDDQVDLF
IVVPLDQVDKQAIFMRLFINLVLGTVVRQDGRRKVKAPILLVLDEFVRMGRMEQIMNIANVAAGAGVEAL
FVTQDTGQVEKAYGPNDARSIFGSCITKRVFNLNDIETAEWAARHLGENTVYSQQIREGKAPNEGRDFSY
SEQRQKLMTAEQITGMKADDLLLLVGNRNPLKAKQNVYFKSKLYRGRFDQNPLS

Protein domains

Predicted by InterproScan.

• Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf) (181-604)

Protein structure

No available structure.

Host bacterium

• ID: 9750
• GenBank: NZ_CP054605
• Plasmid name: H46|unnamed6
• Incompatibility group: -
• Plasmid size: 23927 bp
• Coordinate of oriT [Strand]: 11680..11711 [-]
• Host baterium: Pseudosulfitobacter pseudonitzschiae strain H46

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -