Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 109190
• Name: oriT_pC034MK3
• Organism: Staphylococcus epidermidis strain C034
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP097517 (3892..4011 [+], 120 nt)
• oriT length: 120 nt
• IRs (inverted repeats): 52..58, 62..68 (TTGGGGA..TCCCCAA) 23..30, 34..41 (ATTTTTTC..GAAAAAAT) 1..8, 14..21 (AGTGGCTA..TAGCCACT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 120 nt

>oriT_pC034MK3
AGTGGCTAGCAATTAGCCACTTATTTTTTCGCAGAAAAAATTCTAAGGGGCTTGGGGAGTATCCCCAACAAGCTGGCGCGTCTGCCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_M8Z30_RS12685_pC034MK3

• ID: 6165
• GenBank: WP_002504126
• Name: Relaxase_M8Z30_RS12685_pC034MK3
• UniProt ID: _
• Length: 336 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 336 a.a.
• Molecular weight: 38505.20 Da
• Isoelectric Point: 6.4396

>WP_002504126.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus epidermidis]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLELAEKLAPNHQVAVYTHADTDHVHNHIVMNSIDLETGKKFNNNKQALRNVRNFNDEVCMEHGL
SVPDKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMDEFKDHLNQHGIEIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRRRQQERDSDTEFQPKQPTSNRDESTERDTGVTQSD
WDQFAQDTNELERSRQAAESARLADEKARRNREERAREKQASRTIINDDRDHGLEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-242)

Protein structure

No available structure.

Host bacterium

• ID: 9625
• GenBank: NZ_CP097517
• Plasmid name: pC034MK3
• Incompatibility group: -
• Plasmid size: 7014 bp
• Coordinate of oriT [Strand]: 3892..4011 [+]
• Host baterium: Staphylococcus epidermidis strain C034

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -