Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   108818
Name   oriT_pNY5524-NR1 in_silico
Organism   Pseudomonas aeruginosa strain NY5524
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP096943 (1419..1456 [-], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      7..14, 18..25  (GACTTTGC..GCAAAGTC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pNY5524-NR1
GGGCACGACTTTGCTTCGCAAAGTCTAGTGAGTACACT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   5905 GenBank   WP_033995413
Name   mobV_M2I87_RS34820_pNY5524-NR1 insolico UniProt ID   A0AA97GNU2
Length   324 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 324 a.a.        Molecular weight: 35777.43 Da        Isoelectric Point: 10.3810

>WP_033995413.1 MULTISPECIES: MobV family relaxase [Bacteria]
MAAYAIMRCKKLATMGSVAAALQHCYRERETPNADAERTPDNEHRAATSTDAAMGRLRELLPEKRRKDAV
LAVEYVMTASPEWWAKATPQQQAAFFDQAQGWLAAKYGADRIVTASIHRDEATPHLSAFVVPLTQDGRLS
AKEFIGGRDKMRADQTSFAEAVRDLGLERGIEGSRATHQRVQSYYGAIERQPGHATITPQAIEPRVLRKG
IFSKDVETPEAVAARVTAAVREGYGPTVAAAAGARQEREKARQAQETARSLRDRLKPVLDALGPLNRDMQ
AKAAQIIKAVGEKLLAEQREATRQRQAQRLRSRGRDRDDGGLSR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-185)


  Protein structure



No available structure.




Host bacterium

ID   9253 GenBank   NZ_CP096943
Plasmid name   pNY5524-NR1 Incompatibility group   -
Plasmid size   2953 bp Coordinate of oriT [Strand]   1419..1456 [-]
Host baterium   Pseudomonas aeruginosa strain NY5524

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -