Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   108593
Name   oriT_S91|unnamed3 in_silico
Organism   Ligilactobacillus salivarius strain S91
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP114521 (177635..177688 [+], 54 nt)
oriT length   54 nt
IRs (inverted repeats)      16..22, 28..34  (TCCCCAC..GTGGGGA)
Location of nic site      _
Conserved sequence flanking the
  nic site  
 
 _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 54 nt

>oriT_S91|unnamed3
GTTGATACTGTCAACTCCCCACCGTGCGTGGGGACAGTTTTCCTTATGCTCTTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Host bacterium


ID   9028 GenBank   NZ_CP114521
Plasmid name   S91|unnamed3 Incompatibility group   -
Plasmid size   213661 bp Coordinate of oriT [Strand]   177635..177688 [+]
Host baterium   Ligilactobacillus salivarius strain S91

Cargo genes


Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIC1