Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   108547
Name   oriT_pZ2-336 in_silico
Organism   Streptococcus agalactiae isolate MRI Z2-336
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_OX461092 (1231..1268 [+], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      1..6, 10..15  (CTTTAC..GTAAAG)
Location of nic site      24..25
Conserved sequence flanking the
  nic site    		  GTGTGTTATA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pZ2-336
CTTTACGAAGTAAAGTATAGTGTGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   5708 GenBank   WP_267257384
Name   mobV_OWO33_RS11805_pZ2-336 insolico UniProt ID   _
Length   572 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 572 a.a.        Molecular weight: 66740.54 Da        Isoelectric Point: 5.6021

>WP_267257384.1 MobV family relaxase [Streptococcus agalactiae]
MSFAVARMQKMKVGNLGGAYKHNERVFKNHANKDIDTEKSDLNYELTDRNRSISYEKQITDYVNDNKISD
RAIRKDAVLCDEWIITSDSTFFENLSPERTREYFEANKQYFAENFGDSNIAYASVHMDESTPHMHLGIVP
MENGKLSSKAMFDKKTLLKIQDELPKYLQDKGFDVERGRELSQAKHMTVSEFKENLATKELHETLDKMNI
PRTESVVEYDDRGALVSVEPKEIGIDKRLDFAKDELSKKQLELSKVREQVKEVKTELIDLEDKSARLDIE
IEQQEYQFENSVNDYSKSLYKNQYERVNQLSLEKNVVVPANEELKPELVIDDKFDLKRAQELIQALWENL
RQAMEKTLEKMFSDREKEITAKESKLDQKFDQLAEREQFVAEKEKSLNAVEEHLEEQLADIQEQRERIQK
ANEIVKENGSRIVEREKELDRLNPQIKKWELEFEKQSDIKFKKSPLGKETVTMSKDDYLKIKKDSVGKNT
QISNMYTKLNQLRKYEQNSKDIFSNKLKANKELNPIKKKADLFDALKERSLSVPSLAKEISEVQSLANPV
KKLATGIIRSQM

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-194)


  Protein structure



No available structure.




Host bacterium

ID   8982 GenBank   NZ_OX461092
Plasmid name   pZ2-336 Incompatibility group   -
Plasmid size   3973 bp Coordinate of oriT [Strand]   1231..1268 [+]
Host baterium   Streptococcus agalactiae isolate MRI Z2-336

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -