Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   108546
Name   oriT_MRI Z2-336|IME in_silico
Organism   Streptococcus agalactiae isolate MRI Z2-336
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_OX461091 (3396..3532 [+], 137 nt)
oriT length   137 nt
IRs (inverted repeats)      21..28, 42..49  (AAAAGGGG..CCCCTTTT)
 25..30, 39..44  (GGGGAA..TTCCCC)
Location of nic site      104..105
Conserved sequence flanking the
  nic site    		  GCTTGCAGTA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 137 nt

>oriT_MRI Z2-336|IME
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   5707 GenBank   WP_267257375
Name   Relaxase_OWO33_RS11730_MRI Z2-336|IME insolico UniProt ID   _
Length   410 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 410 a.a.        Molecular weight: 47527.02 Da        Isoelectric Point: 7.0781

>WP_267257375.1 relaxase/mobilization nuclease domain-containing protein [Streptococcus agalactiae]
MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERSVELTNCRAVAVGGTNGIDPFIAKEQFD
VIRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGKKLREQKGESVQRAREMNDRLASRENWHILEPPKECQTETEKELIAKNEYSYMDDLRE
RINKSLQDVSVSSYETFKERLSDNGVILSERGQTFSYAFLDANNKQRRARETRLGSDFGRETILHELENR
ARQNEFSAVEQGEPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESTINRFIDTIKQFAGRVPELTQ
RVTRKLKQTKEKILDDFERRFSKDMKNYEQEQQKSLEKQANRDVQSEKKPTKDHDRGMSR

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(9-280)


  Protein structure



No available structure.




Host bacterium

ID   8981 GenBank   NZ_OX461091
Plasmid name   MRI Z2-336|IME Incompatibility group   -
Plasmid size   19091 bp Coordinate of oriT [Strand]   3396..3532 [+]
Host baterium   Streptococcus agalactiae isolate MRI Z2-336

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -