Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   108470
Name   oriT_pBMB8874 in_silico
Organism   Bacillus thuringiensis strain C15
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP021442 (8776..8868 [+], 93 nt)
oriT length   93 nt
IRs (inverted repeats)      66..71, 75..80  (AATTTC..GAAATT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 93 nt

>oriT_pBMB8874
TCAGCTGAAACGTTGCGAATGAGTGTGCCAAACTTTGTAAAGAAGAAGGCACAAGGGAGTCGTTTAATTTCTCCGAAATTTGATAAGGAGACG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   5665 GenBank   WP_206514861
Name   Relaxase_BtSCAC15_RS32440_pBMB8874 insolico UniProt ID   _
Length   326 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 326 a.a.        Molecular weight: 37137.66 Da        Isoelectric Point: 10.0288

>WP_206514861.1 relaxase/mobilization nuclease domain-containing protein [Bacillus thuringiensis]
MATTKLGNTKSASKTINYAEKRAVEKSGHNCDVAYAKSNFKELRMLYGKDKGVQAHTIIQSFKPGEITPE
KANSIGLELAQSIAKDYQVVIYTHTDTEHIHNHIVINSVNIETGKKYHSNNKQRDLIKSENDRICQARGL
SVVVEKQASVRYTAAEKSLLEKGKISWKDEIRQAVDIAKTRTNDIKGLTAFLDNLGIETRLRGETISYKH
PEALKWVRGSKLGYDYEIGGMERGFERQIGEGKTRTQSINGNEHKRTNQLSSENVGDRTSERVDCATYRP
ISRKYREEQQARERANTLRQQNEQKKQRELEQQSRAIERSGPSLER

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(8-238)


  Protein structure



No available structure.




Host bacterium

ID   8905 GenBank   NZ_CP021442
Plasmid name   pBMB8874 Incompatibility group   -
Plasmid size   8874 bp Coordinate of oriT [Strand]   8776..8868 [+]
Host baterium   Bacillus thuringiensis strain C15

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -