Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 108387
• Name: oriT_pSVQ1_2
• Organism: Salmonella enterica subsp. enterica serovar Virchow str. SVQ1
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CM002365 (5923..5945 [+], 23 nt)
• oriT length: 23 nt
• IRs (inverted repeats): 2..8, 12..18 (ACATTGC..GCAATGT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 23 nt

>oriT_pSVQ1_2
CACATTGCGGAGCAATGTATAAG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_SESV_RS06335_pSVQ1_2

• ID: 5606
• GenBank: WP_071991716
• Name: mobQ_SESV_RS06335_pSVQ1_2
• UniProt ID: _
• Length: 357 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 357 a.a.
• Molecular weight: 42922.92 Da
• Isoelectric Point: 10.4559

>WP_071991716.1 MobQ family relaxase [Salmonella enterica]
MAIFHLNFKILKRSEGKSSLYLSAYNSRTRLKDEKTGLVFNYKKKKEDLMHQEIILPNNAPKSFKDRSTL
WNAVESKNNRRDSQLSRYFIVALPREQTLEQNHKLLTDYIKKNFIKKGMCADIAIHNDADNNNPHAHVML
TMQDVNETGFLNKNREWNNKNNVEIWRRSWAVSVNKSLRENNKKDLVSSLSFLRQKEILIKKANENLNAD
KIDEAEKYLEAYNQMKDKKPKKRKSRQSYIKRKKFKDYAKTYEQQAEDNRIKREKKKEEMKKENKFNSFF
KSVMDKLTNRKKKEAEERKNREIAAMQQWQKNEEKRAELREKLKNENNHEEINYVDKIYNEPNRNQDYNI
PTAKYKI

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (18-153)

Protein structure

No available structure.

Host bacterium

• ID: 8822
• GenBank: NZ_CM002365
• Plasmid name: pSVQ1_2
• Incompatibility group: -
• Plasmid size: 6054 bp
• Coordinate of oriT [Strand]: 5923..5945 [+]
• Host baterium: Salmonella enterica subsp. enterica serovar Virchow str. SVQ1

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -