Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 108373 |
Name | oriT_pYUXJMC1-5 |
Organism | Escherichia fergusonii strain XJ19MCE1 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_CP125355 (585..644 [-], 60 nt) |
oriT length | 60 nt |
IRs (inverted repeats) | _ |
Location of nic site | _ |
Conserved sequence flanking the nic site |
_ |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pYUXJMC1-5
GGGTGTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTGTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileHost bacterium
ID | 8808 | GenBank | NZ_CP125355 |
Plasmid name | pYUXJMC1-5 | Incompatibility group | ColRNAI |
Plasmid size | 3830 bp | Coordinate of oriT [Strand] | 585..644 [-] |
Host baterium | Escherichia fergusonii strain XJ19MCE1 |
Cargo genes
Drug resistance gene | - |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |