Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   108373
Name   oriT_pYUXJMC1-5 in_silico
Organism   Escherichia fergusonii strain XJ19MCE1
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP125355 (585..644 [-], 60 nt)
oriT length   60 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site  
 
 _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 60 nt

>oriT_pYUXJMC1-5
GGGTGTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Host bacterium


ID   8808 GenBank   NZ_CP125355
Plasmid name   pYUXJMC1-5 Incompatibility group   ColRNAI
Plasmid size   3830 bp Coordinate of oriT [Strand]   585..644 [-]
Host baterium   Escherichia fergusonii strain XJ19MCE1

Cargo genes


Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -