Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   108358
Name   oriT_pLS07_2 in_silico
Organism   Lactiplantibacillus plantarum strain LS/07
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP066497 (2160..2197 [-], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      1..7, 19..25  (ACACAAC..GTTGTGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pLS07_2
ACACAACCAACTTTAGTTGTTGTGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   5590 GenBank   WP_047675002
Name   mobQ_EPJ55_RS15665_pLS07_2 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80589.93 Da        Isoelectric Point: 8.9522

>WP_047675002.1 MobQ family relaxase [Lactiplantibacillus plantarum]
MAIFHMSFSNISAGKGRSAIASSAYRSGEKLFDQKEGRSYFYARSVMPESFILTPKNSPEWTSDREQLWN
EVEKKDRKSNSRYAKEFNVALPVELSESEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNPDGTWGLKSKRENILDENGNKTYTGNSRFPRSRKVWLVDWDKKEKITEWRHNWAVSVNQVLEQKNIP
DRISEKSFIEEGIDDTPMQHEGINSKRHERKEFNQEVKDYRKAKASYKNNQEKVINRGHLDSLSKHFSFN
EKRVVKELSHELKTYISLENLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELNFEQTTQAERRELIKETDSEQTVFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGWKLL
MQQEKEVKIELKYTLMIHDDNLESLEHVDQGLLEKYSPTEQQKITRAVKDLRAIMAVKQVIQTQYHEVLK
RAFPKGDLDGLPLIKQEQAYTAVMYYDPVLKPCQAETIEQWQTNPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFFGECKADPTIKNSQIEKIQKQLKGQQAKDDQYRKANIGHYQPLNYKPVSPDY
YLKTAFSNAIMTALYARDEDYQRQKQAQGLKETEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)

MobA/MobL family (MobA_MobL)

(17-241)


  Protein structure



No available structure.




Host bacterium

ID   8793 GenBank   NZ_CP066497
Plasmid name   pLS07_2 Incompatibility group   -
Plasmid size   54690 bp Coordinate of oriT [Strand]   2160..2197 [-]
Host baterium   Lactiplantibacillus plantarum strain LS/07

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21