Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   108326
Name   oriT_pCC283b_4 in_silico
Organism   Rhizobium leguminosarum strain CC283b
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP121639 (543466..543502 [+], 37 nt)
oriT length   37 nt
IRs (inverted repeats)      22..27, 32..37  (CGTCGC..GCGACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 37 nt

>oriT_pCC283b_4
GGATCCAAGGGCGCAATTATACGTCGCCGGCGCGACG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP

ID   5936 GenBank   WP_027691178
Name   traG_QA638_RS38510_pCC283b_4 insolico UniProt ID   _
Length   644 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 644 a.a.        Molecular weight: 69603.02 Da        Isoelectric Point: 9.6043

>WP_027691178.1 Ti-type conjugative transfer system protein TraG [Rhizobium leguminosarum]
MTINRIALVIVPAALMIPVVIGMTGIEQWLSGFGKTEAARLAWGRAGIALPYVAGAAIGLLLLFAIAGSI
NIKQAGWGVVVGSSGTILVAAVRETMRLFSFMKTVPADKTVLAFLDPATSIGASAALLCACFALRVALIG
NAAFARAEPKRIQGKRALHGEADWMKLTEAAKLFPDAGGIVIGERYRVDKDSVGARAFRADSVETWGVGG
KSSLLCFDGSFGSSHGIVFAGSGGFKTTSVTIPTALKWGGTLIVLDPSNEVAPMVSGHRGGAGRDVFVLD
PRKPDVGFNVLDWVGRFGGTKEEDIASVASWIMSDSGGARGVRVDFFRASALQLLTALIADVCLSGHTDE
KDQTLRQVRMNLSEPEPTLRKRLQDIYDNSGSDFVKENVAAFVNMTPETFSGVYANAVKETHWLSYPNYA
ALVSGKKFSTSDIAAGNTDVFINIDLKTLETHSGLARVIIGSFLNVIYNRDGQIRGRALFLLDEVARLGY
MRIIETARDAGRKYGITLTMIYQSIGQMRETYGGRDAASKWFESASWISFAAINDPETADYISRRCGMTT
VEIDQVSRSFQARGSSRTRSKQLAARPLIQPHEVLRMRADEQIVFIAGNAPLRCGRAIWFRRDDMKACVG
TNRFHMIGDTPKTA

  Protein domains


Predicted by InterproScan.

Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf)

(163-634)

  Protein structure



No available structure.




Host bacterium

ID   8761 GenBank   NZ_CP121639
Plasmid name   pCC283b_4 Incompatibility group   -
Plasmid size   549331 bp Coordinate of oriT [Strand]   543466..543502 [+]
Host baterium   Rhizobium leguminosarum strain CC283b

Cargo genes

Drug resistance gene   -
Virulence gene   phzD1
Metal resistance gene   hupE
Degradation gene   -
Symbiosis gene   nodD, nodF, nodE, nodM, nodA, nodC, nodI, nodJ, nifT, fixX, fixC, fixB, fixA, nifH, nifD, nifE, fixN, fixO, fixQ, fixG
Anti-CRISPR   -