Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 108321
• Name: oriT_pUnnamedsez14
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ14
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP065057 (4509..4549 [-], 41 nt)
• oriT length: 41 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 41 nt

>oriT_pUnnamedsez14
CACATTTACGAAGTAAAGTATAGTAAGTTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_I2433_RS10410_pUnnamedsez14

• ID: 5563
• GenBank: WP_206152584
• Name: mobV_I2433_RS10410_pUnnamedsez14
• UniProt ID: _
• Length: 499 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 499 a.a.
• Molecular weight: 58393.86 Da
• Isoelectric Point: 5.7383

>WP_206152584.1 MobV family relaxase [Streptococcus equi]
MSYMVARMQKMKAGNLGGAYKHNERVFETHSNKDIDPSRSHLNYELTDRDRSVSYERQIKDYVNENKISN
RAIRKDAVLCDEWIITSDKSFFEKLSEEETREFFETAKNYFSENYGEDNIAYASVHLDESTPHMHMGVVP
FQDGKLSSKAMFDKEELKKIQEDLPKYMNEHGFELERGELNSEAKHKTVAEFKQEMAGKEIEKQLVLEYG
APEYVNHQEEFVTKEEYQEAYEVFQNELGAWVDKSDFSWRETTFQEKIDWVKNHQQEELQQLVSSRKPLE
DEIRTLNEVLKEKYEELDKIELRASESLSELSGVEGYINNLEKHSNALESKIGGLENEYLRLAKQNARLS
DLKIMSEKELAEIQPKKGMFGKEHVELTKDQFEKFKGLIYRSKNLVHEKELENDQLRRQMPLRSSKNGFE
ASLQRAKDKTKGESIDRLKSEIRGLKNENSVLRQQNDKMLGKLREFMPDKALKNFVSELKAIQPIVKIVK
RVIEKGLGL

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-194)

Protein structure

No available structure.

Host bacterium

• ID: 8756
• GenBank: NZ_CP065057
• Plasmid name: pUnnamedsez14
• Incompatibility group: -
• Plasmid size: 4652 bp
• Coordinate of oriT [Strand]: 4509..4549 [-]
• Host baterium: Streptococcus equi subsp. zooepidemicus strain SEZ14

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -