Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 108303
• Name: oriT_pML7057-1
• Organism: Staphylococcus epidermidis strain 7057
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP118821 (4490..4609 [+], 120 nt)
• oriT length: 120 nt
• IRs (inverted repeats): 52..59, 61..68 (TTGGGGAT..ATCCCCAA) 22..29, 34..41 (ATTTTTTC..GAAAAAAT) 1..8, 14..21 (AGTGGCTA..TAGCCACT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 120 nt

>oriT_pML7057-1
AGTGGCTAGCAATTAGCCACTATTTTTTCGTCAGAAAAAATCCTAAGGGGCTTGGGGATTATCCCCAACAAGCTGGCGCGTCTGCCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_PYH56_RS12280_pML7057-1

• ID: 5549
• GenBank: WP_282895997
• Name: Relaxase_PYH56_RS12280_pML7057-1
• UniProt ID: _
• Length: 336 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 336 a.a.
• Molecular weight: 38481.23 Da
• Isoelectric Point: 6.7287

>WP_282895997.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus epidermidis]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLVLAEKIAPNHQVAVYTHADTDHVHNHIVINSIDLETGKKFNNNKQALRNVRNFNDEVCIEHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMDEFKDHLNQHGIEIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRRRQQEQDSDTEFQPKRPTSSRDESTERDTGVTQSD
WDQFAQDTNELERSRQAAESARLADEKARRDREERERAKQASRRIINNDRDHGLEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-242)

Protein structure

No available structure.

Host bacterium

• ID: 8738
• GenBank: NZ_CP118821
• Plasmid name: pML7057-1
• Incompatibility group: -
• Plasmid size: 8586 bp
• Coordinate of oriT [Strand]: 4490..4609 [+]
• Host baterium: Staphylococcus epidermidis strain 7057

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -