Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 108253
• Name: oriT_pML7048-1
• Organism: Mammaliicoccus lentus strain 7048
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP118849 (2209..2309 [+], 101 nt)
• oriT length: 101 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 101 nt

>oriT_pML7048-1
TCATCGGCCGAAACTTTGAATATGAGTGTGCCGAATTTTGTTAAAAAGAAGGCACAGGGAAGTCGATTGGTAGCGCCCAAATTTGATAAAGAGACGCGACA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Rep_trans_PYH69_RS15595_pML7048-1

• ID: 5520
• GenBank: WP_282862988
• Name: Rep_trans_PYH69_RS15595_pML7048-1
• UniProt ID: _
• Length: 316 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 316 a.a.
• Molecular weight: 38054.06 Da
• Isoelectric Point: 6.5987

>WP_282862988.1 replication initiation factor domain-containing protein [Mammaliicoccus lentus]
MSKNNHANHSNHLENHDLDNFSKTGYSNSRLNRHRMYTPYPKLSFDAMTIVGNLNKDNAQKLSGFMSVEP
QIRLWDILQTKFKAKALQEKVYIEYDKVKADSWDRRNMRVEFNPNKLTREEMIWLKQNIISYMEDDGFTR
LDLAFDFEHDLSDYYAMSDKAVKKTTFYGRNGKPETKYFGVRDSDRFIRIYNKKQERKDNADVEVMSEHL
WRVEIELKRDMVDYWNDCFNDLHILKPDYSTIENIQERAMIYLLIHEEDEWGKLERRTKNKYRDLLKTIS
DIDLTDLMKLTLKENEQELQKQIEFFIGSVSLWKDF

Protein domains

Predicted by InterproScan.

• Replication initiation factor (Rep_trans) (138-285)

Protein structure

No available structure.

Host bacterium

• ID: 8688
• GenBank: NZ_CP118849
• Plasmid name: pML7048-1
• Incompatibility group: -
• Plasmid size: 4412 bp
• Coordinate of oriT [Strand]: 2209..2309 [+]
• Host baterium: Mammaliicoccus lentus strain 7048

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -