Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   108140
Name   oriT_CF12|unnamed3 in_silico
Organism   Citrobacter freundii strain CF12
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP124817 (4030..4071 [+], 42 nt)
oriT length   42 nt
IRs (inverted repeats)      7..13, 25..31  (CGTTTCT..AGAAACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 42 nt

>oriT_CF12|unnamed3
GCGCACCGTTTCTGAACAAAGTGAAGAAACGTCTAAGTGCGC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   5456 GenBank   WP_061351404
Name   mobA_QLG15_RS25370_CF12|unnamed3 insolico UniProt ID   A0A7W3DK51
Length   369 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 369 a.a.        Molecular weight: 42680.23 Da        Isoelectric Point: 6.4015

>WP_061351404.1 MULTISPECIES: mobilization protein MobA [Enterobacterales]
MASYHLSVKTGGKGSASPHADYISRDGKYAREKDSDLEHKESGNMPAWAAHKPSEFWKAADTSERANGCT
YREIEIALPRELKPEQRLELVRDFVQQEIGDRHAYQFAIHNPKAAIAGGEQPHAHIMFSERINDGIHRDP
EQYFKRANTKEPERGGAKKARFGETPTERKEYLVAQRERWADLQNKHLERYQHADRVDSRSLKAQGIDRE
PERHLGAGQVQRFDTEQLQSILARREAERQAQQSRDERDCVIDVTTSLREAIHERDDASVKPAQQPEPEV
AAGITFDFEKEPDKLNALVSDAMKDVQEEIDLQSLVNDAMAEFQGIHQEMERQRERERLAEKQRQQEKER
QRLAEQIRQKPDKGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(42-218)


  Protein structure


Source ID Structure
AlphaFold DB A0A7W3DK51


Host bacterium

ID   8575 GenBank   NZ_CP124817
Plasmid name   CF12|unnamed3 Incompatibility group   ColE10
Plasmid size   9547 bp Coordinate of oriT [Strand]   4030..4071 [+]
Host baterium   Citrobacter freundii strain CF12

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -