Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107972
Name   oriT_pCAVP490-3123 in_silico
Organism   Providencia stuartii strain CAVP490
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP119550 (545..587 [-], 43 nt)
oriT length   43 nt
IRs (inverted repeats)      9..15, 19..25  (ACTTTAC..GTAAAGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 43 nt

>oriT_pCAVP490-3123
GGTCACGTACTTTACGAAGTAAAGTCTAGTGAGTACACTTCAA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   5347 GenBank   WP_276123118
Name   mobV_P2E05_RS21360_pCAVP490-3123 insolico UniProt ID   _
Length   328 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 328 a.a.        Molecular weight: 37167.00 Da        Isoelectric Point: 10.4391

>WP_276123118.1 MobV family relaxase [Providencia stuartii]
MAFAIMRAKKLNSMGTVAAALQHCYRDRETPNADQERTPDNVHLAARSTDEAMGQLRERLPEKRRKDAVL
AVEYVMSASPEWWQTASADQQREFFKRSTEWLADKYGAENVVTATIHRDELTPHLSAFVVPRTADGRLSA
KEFIGNRTKMSQDQTSYAERVADLGLERGIEGSRATHQRVKTHYGAIQQAGRDVPHLTPDELKPQKVKGV
SLAEKVFGAVETVEGVAQRLNAKIMGSVQPMAEKAAVSAQNERRAKELRETLAQQQKRLQALQEPFKGLS
KDQVAGLIRQAVKLRQENEQEKQERAQQIKERFKAKRERERSDRSRGR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-183)


  Protein structure



No available structure.




Host bacterium

ID   8407 GenBank   NZ_CP119550
Plasmid name   pCAVP490-3123 Incompatibility group   -
Plasmid size   3123 bp Coordinate of oriT [Strand]   545..587 [-]
Host baterium   Providencia stuartii strain CAVP490

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -