Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 107966 |
| Name | oriT_pSHDS0050etx  |
| Organism | Clostridium perfringens D strain SHDS0050 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP116435 (1438..1587 [+], 150 nt) |
| oriT length | 150 nt |
| IRs (inverted repeats) | 133..138, 142..147 (ATACAT..ATGTAT) 117..123, 137..143 (ATTATAT..ATATAAT) 119..125, 129..135 (TATATAT..ATATATA) 121..127, 129..135 (TATATAT..ATATATA) 123..128, 130..135 (TATATA..TATATA) 112..118, 122..128 (TATATAT..ATATATA) 112..118, 120..126 (TATATAT..ATATATA) 112..117, 119..124 (TATATA..TATATA) 20..25, 28..33 (TTTAAA..TTTAAA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 150 nt
>oriT_pSHDS0050etx
AAGGAACTTTACAGGGAACTTTAAAAATTTAAATTGATATAAAAGTTCCCTGTATTAATATAAGTATTTTAAAGGTATATATCATTATTAGTTCCTTATCGTATTATAGAGTATATATTATATATATAATATATACATATAATGTATTGG
AAGGAACTTTACAGGGAACTTTAAAAATTTAAATTGATATAAAAGTTCCCTGTATTAATATAAGTATTTTAAAGGTATATATCATTATTAGTTCCTTATCGTATTATAGAGTATATATTATATATATAATATATACATATAATGTATTGG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
T4CP
| ID | 5625 | GenBank | WP_243122740 |
| Name | tcpA_PL326_RS15645_pSHDS0050etx |
UniProt ID | _ |
| Length | 530 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 530 a.a. Molecular weight: 60569.79 Da Isoelectric Point: 5.4292
>WP_243122740.1 FtsK/SpoIIIE domain-containing protein [Clostridium perfringens]
MIFLSSDWEKKVNQEIENGANAIINEIANVLRIFFFRVGLGFKKSWKNKKLFIGFFLSFLIPIAARIKSD
YFLVDTKFYFKIIYFSTFIAPLFYMVIVSFIKNKEDKRNAEYRLAFEQLNFVGADSKTPILKSFIEDKGT
RIDEITFESMIPIETWKSYIPQLQTSLNISIISIEQGASKRIVIIKSMAGDAKIPEEILWDDKYIEEQEG
VVVVGQTFSGNIKIDLNKSPHILSAGETGSGKSVILRCILWQLLKQGAIAYMVDFKGGVEFGLEYEKVGQ
VITEVDAAEKLFKYLVDENAKRLKLLRESGSKNIGEYNKKFEGEELKRIIVVIDELAELMDKTGVDDETR
AKLVRIEGYTSTLARLSRATGINLCIGVQRPDAKVITGQIKNNVPVRICGRFADSKASEIVLSNTKAKDL
PEVKGRFLFKLGADTVQFQAFYFDDDKHFIPNKILKLRKDEIEDKKVGLDLNKEKLIDDNLMNSVNEKFE
IKEVKSMDSNIENEDDSKFENFEEQNKTENLKSTINDDYE
MIFLSSDWEKKVNQEIENGANAIINEIANVLRIFFFRVGLGFKKSWKNKKLFIGFFLSFLIPIAARIKSD
YFLVDTKFYFKIIYFSTFIAPLFYMVIVSFIKNKEDKRNAEYRLAFEQLNFVGADSKTPILKSFIEDKGT
RIDEITFESMIPIETWKSYIPQLQTSLNISIISIEQGASKRIVIIKSMAGDAKIPEEILWDDKYIEEQEG
VVVVGQTFSGNIKIDLNKSPHILSAGETGSGKSVILRCILWQLLKQGAIAYMVDFKGGVEFGLEYEKVGQ
VITEVDAAEKLFKYLVDENAKRLKLLRESGSKNIGEYNKKFEGEELKRIIVVIDELAELMDKTGVDDETR
AKLVRIEGYTSTLARLSRATGINLCIGVQRPDAKVITGQIKNNVPVRICGRFADSKASEIVLSNTKAKDL
PEVKGRFLFKLGADTVQFQAFYFDDDKHFIPNKILKLRKDEIEDKKVGLDLNKEKLIDDNLMNSVNEKFE
IKEVKSMDSNIENEDDSKFENFEEQNKTENLKSTINDDYE
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 8401 | GenBank | NZ_CP116435 |
| Plasmid name | pSHDS0050etx | Incompatibility group | - |
| Plasmid size | 54591 bp | Coordinate of oriT [Strand] | 1438..1587 [+] |
| Host baterium | Clostridium perfringens D strain SHDS0050 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | ext |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA7 |