Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   107956
Name   oriT_pNCTC3110etx in_silico
Organism   Clostridium perfringens B strain NCTC3110
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP116437 (1438..1587 [+], 150 nt)
oriT length   150 nt
IRs (inverted repeats)      133..138, 142..147  (ATACAT..ATGTAT)
 117..123, 137..143  (ATTATAT..ATATAAT)
 119..125, 129..135  (TATATAT..ATATATA)
 121..127, 129..135  (TATATAT..ATATATA)
 123..128, 130..135  (TATATA..TATATA)
 112..118, 122..128  (TATATAT..ATATATA)
 112..118, 120..126  (TATATAT..ATATATA)
 112..117, 119..124  (TATATA..TATATA)
 20..25, 28..33  (TTTAAA..TTTAAA)
Location of nic site      _
Conserved sequence flanking the
  nic site  
 
 _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 150 nt

>oriT_pNCTC3110etx
AAGGAACTTTACAGGGAACTTTAAAAATTTAAATTGATATAAAAGTTCCCTGTATTAATATAAGTATTTTAAAGGTATATATCATTATTAGTTCCTTATCGTATTATAGAGTATATATTATATATATAATATATACATATAATGTATTGG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP


ID   5614 GenBank   WP_012564953
Name   tcpA_PL324_RS15775_pNCTC3110etx insolico UniProt ID   _
Length   523 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 523 a.a.        Molecular weight: 59697.95 Da        Isoelectric Point: 7.1018

>WP_012564953.1 FtsK/SpoIIIE domain-containing protein [Clostridium perfringens]
MGKKVNQEVENGLNAIINEIANVLKIFFFRVGLGFKKSWKNKKLFIGFFLSFLIPIAARIKSDYFLVDTK
FYFKIIYFSTFIAPLFYMVIVSFVKNKEDKRNAEYRLAFEQLNFVGADSKTPILKSFIEDKGTRIDEITF
ESMIPIETWKSYIPQLQTSLNISIISIEQGASKRIVIIKSMAGDAKIPKYLPWDDKYIEEQEGVVVVGQT
FSGNIKIDLNKSPHILSAGETGSGKSVILRCILWQLLKQGAIAYMVDFKGGVEFGLEYEKVGQVITEVDA
AEKLFKYLVDENAKRLKLLRESGSKNIGEYNKKFEGEELKRIIVVIDELAELMDKTGVDDETRAKLVRIE
GYTSTLARLSRATGINLCIGVQRPDAKVITGQIKNNVPVRICGRFADSKASEIVLSNTKAKDLPEVKGRF
LFKLGADTVQFQAFYFDDDKHFIPNKILKLRKDEIEDKKVCLDLNKEKLIDNDLMNSVNEKFEIKEVKSM
DSNIENEDDSKFENFEEQNKTENLKSTINDDYE

  Protein domains


Predicted by InterproScan.

(202-316)

  Protein structure



No available structure.




Host bacterium


ID   8391 GenBank   NZ_CP116437
Plasmid name   pNCTC3110etx Incompatibility group   -
Plasmid size   64721 bp Coordinate of oriT [Strand]   1438..1587 [+]
Host baterium   Clostridium perfringens B strain NCTC3110

Cargo genes


Drug resistance gene   -
Virulence gene   ext
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA7