Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107916
Name   oriT_pKM0706b in_silico
Organism   Serratia sp. K-M0706
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP124752 (8095..8136 [+], 42 nt)
oriT length   42 nt
IRs (inverted repeats)      7..13, 25..31  (CGTTTCT..AGAAACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 42 nt

>oriT_pKM0706b
GCGCACCGTTTCTGAACGAAGTGAAGAAACGTCTAAGTGCGC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   5309 GenBank   WP_282495090
Name   mobA_SSARUM_RS24510_pKM0706b insolico UniProt ID   _
Length   365 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 365 a.a.        Molecular weight: 42246.67 Da        Isoelectric Point: 6.3351

>WP_282495090.1 mobilization protein MobA [Serratia sp. K-M0706]
MASYHLSVKTGGKGSASPHADYISREGKYAREKDSDLEHKESGNMPAWAEHKPSEFWKAADTSERANGCT
YREIEIALPRELKPEQRLELVRDFVRQEIGDRHAYQFAIHNPKAAIAGGEQPHAHIMFSERMNDGIDRDP
QQYFKRANSKAPERGGAKKARFGETPTERKEHLVAQRERWADLQNKHLERYQHTDRVDARSLKAQGIERE
PERHLGAGQVQRFDTAQLQAILERRDAERQAEQSRDERDSVIDVTTSLREAISERDNLTIKQEQKPEPAQ
EDTSGRVFDFEKEPEKLNARVSDAMKDIQEEIDLQSLVNDAMAEFQGIHQEMERLAEKQRQQEKEQQRLA
EQTRQKPDKGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(42-218)


  Protein structure



No available structure.




Host bacterium

ID   8351 GenBank   NZ_CP124752
Plasmid name   pKM0706b Incompatibility group   ColE10
Plasmid size   9297 bp Coordinate of oriT [Strand]   8095..8136 [+]
Host baterium   Serratia sp. K-M0706

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -