Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 107889 |
| Name | oriT_pJBIWA005_4  |
| Organism | Enterobacter sp. JBIWA005 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP074163 (1710..1769 [+], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pJBIWA005_4
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 5291 | GenBank | WP_245405370 |
| Name | Relaxase_KGP22_RS24205_pJBIWA005_4 |
UniProt ID | _ |
| Length | 497 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 497 a.a. Molecular weight: 54535.32 Da Isoelectric Point: 5.9730
>WP_245405370.1 relaxase/mobilization nuclease domain-containing protein [Enterobacter sp. JBIWA005]
MIVKFHARGRGGGSGPVDYLLGKERNREGASVLQGKPEEVRELIDASPYAKKYTSGVLSFAEADLPAGQS
EKVMDSFERVLMPGLDKDQYSILWVEHRDKGRLELNFLIPNTELLTGKRLQPYYDRADRPRIDAWQTIVN
ARLGLHDPNAPENRRMLVTPNTLPKTKQEAAEAITDGLVRLCVAGELKTRQDVTEALTAAGFDVVRTTKN
SISIADPDGGRNIRLKGAIYEQSFEAGDGPGAEIERAAAVYRENAESRLQRAREVCQRGTELKSVENQRR
HQRPREGHDRSHAVEQAERDAYGRADVADHHHGVRAAVRQPERGAVVSGEPDSVEPGGNRPAERGAVEAE
REDMGRDAPGRQPRTLSGAAEGNESRSGLDGGQREAERGEAGEGVTEHDRAGNAVAERIREVTAGLLAKA
GRVGERLRGIAEDVWSYATGQRAAERAGHALESAGGALERATESFEPVVQRHELAEAEKKQREHEKTLEL
GDREYGD
MIVKFHARGRGGGSGPVDYLLGKERNREGASVLQGKPEEVRELIDASPYAKKYTSGVLSFAEADLPAGQS
EKVMDSFERVLMPGLDKDQYSILWVEHRDKGRLELNFLIPNTELLTGKRLQPYYDRADRPRIDAWQTIVN
ARLGLHDPNAPENRRMLVTPNTLPKTKQEAAEAITDGLVRLCVAGELKTRQDVTEALTAAGFDVVRTTKN
SISIADPDGGRNIRLKGAIYEQSFEAGDGPGAEIERAAAVYRENAESRLQRAREVCQRGTELKSVENQRR
HQRPREGHDRSHAVEQAERDAYGRADVADHHHGVRAAVRQPERGAVVSGEPDSVEPGGNRPAERGAVEAE
REDMGRDAPGRQPRTLSGAAEGNESRSGLDGGQREAERGEAGEGVTEHDRAGNAVAERIREVTAGLLAKA
GRVGERLRGIAEDVWSYATGQRAAERAGHALESAGGALERATESFEPVVQRHELAEAEKKQREHEKTLEL
GDREYGD
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 2438 | GenBank | WP_223582847 |
| Name | WP_223582847_pJBIWA005_4 |
UniProt ID | _ |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11979.78 Da Isoelectric Point: 7.8971
>WP_223582847.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Enterobacter]
MLTLWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPTLAPVLLRQLAGMGNNLNQIARRVNAG
GGSGHDRVQIVSTLMAIDAGLERLRHAVLEDRLDDDR
MLTLWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPTLAPVLLRQLAGMGNNLNQIARRVNAG
GGSGHDRVQIVSTLMAIDAGLERLRHAVLEDRLDDDR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 8324 | GenBank | NZ_CP074163 |
| Plasmid name | pJBIWA005_4 | Incompatibility group | Col440II |
| Plasmid size | 6794 bp | Coordinate of oriT [Strand] | 1710..1769 [+] |
| Host baterium | Enterobacter sp. JBIWA005 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |