Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 107881 |
Name | oriT_pJBIWA001_7 |
Organism | Raoultella planticola strain JBIWA001 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_CP074189 (7326..7375 [+], 50 nt) |
oriT length | 50 nt |
IRs (inverted repeats) | 5..12, 15..22 (GCAAAATT..AATTTTGC) |
Location of nic site | _ |
Conserved sequence flanking the nic site |
_ |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 50 nt
>oriT_pJBIWA001_7
ATCTGCAAAATTTTAATTTTGCGTGGTGTGTGGGTATTTTTCGTGGTGAG
ATCTGCAAAATTTTAATTTTGCGTGGTGTGTGGGTATTTTTCGTGGTGAG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileHost bacterium
ID | 8316 | GenBank | NZ_CP074189 |
Plasmid name | pJBIWA001_7 | Incompatibility group | Col440I |
Plasmid size | 7585 bp | Coordinate of oriT [Strand] | 7326..7375 [+] |
Host baterium | Raoultella planticola strain JBIWA001 |
Cargo genes
Drug resistance gene | - |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |