Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107880
Name   oriT_pJBIWA001_5 in_silico
Organism   Raoultella planticola strain JBIWA001
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP074187 (11096..11232 [-], 137 nt)
oriT length   137 nt
IRs (inverted repeats)      28..33, 37..42  (ACATGC..GCATGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 137 nt

>oriT_pJBIWA001_5
CGAATGGGCAGGCGGGGATTGGCAGGAACATGCGTAGCATGTGTATGACAATCCGCATCCTGTATTGCTCAACCACTCTACTATCATATCAGCAGTTTAGGTGCACGGGACGCACTTTGCAACAAGCATAAAAGGCG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   5290 GenBank   WP_223526268
Name   Relaxase_KGP19_RS29625_pJBIWA001_5 insolico UniProt ID   _
Length   890 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 890 a.a.        Molecular weight: 101885.39 Da        Isoelectric Point: 9.7913

>WP_223526268.1 TraI/MobA(P) family conjugative relaxase [Raoultella planticola]
MIVKKVPNPKKSASKAQRIGQLTSYVRSPESESPQEKCLYAGARGFMMDDPKSQTAEMIALSQEAVRSKD
TINHYVLSWREGEQPSPEQVEEAVSIFMDELGWKDHQAIYGLHSDTDNIHLHIVINRVHPETLKIVEKNR
GFDIELAHKAIARIEHAQGWQREQNGRYQVLENGELGRAPYDPEKPRQPDQKKRDMENRTGEKSAHRIAI
EDGAAIIKQAQTWEQLHRELAAKGMRYEKTGSGATVFVGDVGVKASDVDRNASLAKMQKRLGEYQPAPQR
QQVAPREPEPIKPDVPGWKDYITGRKAHYAEKNADKLAQDKRQEQERKQLAEQQKARRDELMRGNWKGKG
EVLNAMRSVIAAEQAAEKAALKEKHQKEREQHRQRFRPYPDLEQWQRMQKSPELAEQWRHRASEPQRIEG
DRSEPPTPRDIRAYQPEIVGQQVHYSRKEEAGRGGGVSFVDKGKSIDIHDWRNRDSTLAALQLSAQKWGS
FTVMGNDEYKAMCGKLAAEHGFKITNPELQESIQQERQRIQQERVQAMKSEQLKQFERYAEAVGAERYRV
TSIKMREDGSKQTFILDKKDGITRGFTPQEIEQRTPEMQRLQRRGENLYYTPLSDKKHHILIDDMNREKL
ERLIRDGYQPAAVLESSPGNYQAIITVPKLGTAHDKDVGNRLSDALNREYGDPKLSGAIHPHRAPGYENR
KPKHQREDGSYPEVRLLKAERRECIKALALSSQIDAEYQRQAALKAQQPERSKAKPALELAAASGSAIDA
YQRHYRDVIKRQRGGEVDLSRVDSMIAVRMRVTGHDQAAIEGAIRQCAPATRQKGEGRDWNDYAQRTARY
AYSAAGDRQAAELGKYRQQWEKLEGREPVRQQEQAKAQKIERDNSPGMSR

  Protein domains


Predicted by InterproScan.

RepB DNA-primase from phage plasmid (RepB_primase)

(548-807)

Relaxase/Mobilisation nuclease domain (Relaxase)

(45-274)

Large polyvalent protein-associated domain 7 (LPD7)

(439-527)


  Protein structure



No available structure.




Host bacterium

ID   8315 GenBank   NZ_CP074187
Plasmid name   pJBIWA001_5 Incompatibility group   IncP6
Plasmid size   32930 bp Coordinate of oriT [Strand]   11096..11232 [-]
Host baterium   Raoultella planticola strain JBIWA001

Cargo genes

Drug resistance gene   blaGES-5, aac(6')-IIa, aadA16, qacE, sul1
Virulence gene   -
Metal resistance gene   merR, merT, merP, merC, merA, merD, merE
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -