Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 107844 |
Name | oriT_p1C2 |
Organism | Citrobacter freundii strain IDR1800045912-01-00 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_CP054300 (1095..1154 [+], 60 nt) |
oriT length | 60 nt |
IRs (inverted repeats) | _ |
Location of nic site | _ |
Conserved sequence flanking the nic site |
_ |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_p1C2
GGGTGTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTGTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileHost bacterium
ID | 8279 | GenBank | NZ_CP054300 |
Plasmid name | p1C2 | Incompatibility group | Col440I |
Plasmid size | 2155 bp | Coordinate of oriT [Strand] | 1095..1154 [+] |
Host baterium | Citrobacter freundii strain IDR1800045912-01-00 |
Cargo genes
Drug resistance gene | - |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |