Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107843
Name   oriT_p1C9 in_silico
Organism   Citrobacter freundii strain IDR1800045912-01-00
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP054298 (101..136 [-], 36 nt)
oriT length   36 nt
IRs (inverted repeats)      4..11, 15..22  (GCAAACTC..GAGTTTGC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 36 nt

>oriT_p1C9
CACGCAAACTCGAAGAGTTTGCATAAGTGCGCCCTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   5265 GenBank   WP_072052381
Name   mobQ_HS089_RS25805_p1C9 insolico UniProt ID   _
Length   607 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 607 a.a.        Molecular weight: 69225.57 Da        Isoelectric Point: 10.5423

>WP_072052381.1 MULTISPECIES: MobQ family relaxase [Enterobacterales]
MAIFHLSVKTISRSAGRSATAAIAYRTGSRIVDERTGIIHDYTRKSGVEHSEIFLPQNSPDWASNRETLW
NAVEQKENRRNSTVAREFELAFPAELDGKQRLELLRDFCSSLVERHGMAVDAAIHAPGKEGDQRNHHAHV
LCSTRRLSEEGFKDKTRELDDFKSGEVNHWRSAWSEMTNRHLEKAGRSERIDHRSLEAQRESAISQGDSA
KAAKLDRVPTIHIGYAAAQMEKRGLETERGNEYRQIILRNAEIQPLSRAIQLIDNWRATHDNNSRAGHGS
IAPVPERDKGRDKRGVRTAQSYTGRVGAVPPPSARGRLRNLSELDMVRFGERSEMLLPGNVSRDVEHQRT
DRNQPLRRENTVTSKSKRPEVIRLEWQSLRRDKLTFVQDKAGRIAARGAAHVERQRQKISSHERQRPEQP
SGLIGMFKRSAYEQAASTWQTIKNGLDRRLVQLKNRLGFVRDYMRKSGAYEMSTPGERLADQLAAKENPI
LAGQIKSLNAQKNAEDMAAYRTRVQSRKQEKADMKLETIEELKQRGDARRDKADKAERAELEKASHQASL
QNETLSEETKELESGEKEKLSKRDQVLEKFKAKVERDKQNERGGRGR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-233)


  Protein structure



No available structure.




T4CP

ID   5509 GenBank   WP_220384729
Name   t4cp2_HS089_RS25485_p1C9 insolico UniProt ID   _
Length   827 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 827 a.a.        Molecular weight: 89500.64 Da        Isoelectric Point: 7.1898

>WP_220384729.1 MULTISPECIES: type IV secretory system conjugative DNA transfer family protein [Enterobacteriaceae]
MKKNILAGIFFVAMLLPVWHAAAETFTRCHPNETVWAMIQDEQLKNIARLQETKRCQAVNDTYDQWRQNF
QAMGDAENAIRSARDHQNWNAVKSTFDNIAPQINSLHALAEKNSSLLGAGNILALFGGDLNYLYQNAGLV
APASADGLTDNVSQMLTEPDKQVKAAGIAQQLVYQTRVRAQSFIQGVAQNAGNEAQKEYRAQSDKIVEDK
AHNFKGDSVEGYFGGFLARISQVYAPVLLFLIIVGIIGALTARRVRLDAFTASVKAVMAAAVPAVALALM
LIFMPFLPSWVLYAAALAVTFAIYSRSKKILGGLASRCGRFPALASGLRWMGGFVSGLDADRKQETGAAS
VNPASHHTHGSSRWGTAAEMRENNHLLPTEKQAGFTLARELSPPPGVDGKFCFTGHVVTVAPTGSGKGIG
AVIPNLLTYQGSALVFDPKGENAEVTGRRRREMGQSVHVIDPFGITSGIKESVNILDRLDVTSPDCVAES
AVLAESLVVSEKGGDGNHFDESARTLLQGLMLHVSGLPDESRRNLAELRRLITSDEENLLALLADMAASE
DVAFGIPARAANTLMGMADRERGSVLSTARKNTAFLDDPRIAAALSHSDFNLSAIKAEPMTVYLVLPANR
IAANTRFVRLFIGSVISAVTESKAKPAHNVAFILDEFNVLGYMKSIEDAVSLLRGYGLSFWVFLQDLSQL
KSAYPKWQTFLANSAKTFYGTDDYDTAKYVSDTLGKSTVEFETQNSGRNSGGGVSGGGGSMNRGRSSGSS
QQFAGRELLTPDEVMRLGPTRPIVILKGEYPYQLTRINYLTDPEYTGMADPNPYYSA

  Protein domains


Predicted by InterproScan.

Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf)

(398-816)

  Protein structure



No available structure.




Host bacterium

ID   8278 GenBank   NZ_CP054298
Plasmid name   p1C9 Incompatibility group   ColRNAI
Plasmid size   8828 bp Coordinate of oriT [Strand]   101..136 [-]
Host baterium   Citrobacter freundii strain IDR1800045912-01-00

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -