Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 107799
• Name: oriT_ptw2795
• Organism: Staphylococcus capitis strain TW2795
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_AP017298 (3801..3898 [-], 98 nt)
• oriT length: 98 nt
• IRs (inverted repeats): 30..36, 40..46 (TTGGGGA..TCCCCAA) 1..7, 12..18 (TTTTTTC..GAAAAAA)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 98 nt

>oriT_ptw2795
TTTTTTCGTCAGAAAAAATCTTAAGGGGCTTGGGGAGTATCCCCAACAAGCTGGCGCGTCTGACACGTGAGTGGCTAGCAAAGCCAGTGCTTGCCAAA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_JMUB0001_RS12205_ptw2795

• ID: 5236
• GenBank: WP_064585279
• Name: Relaxase_JMUB0001_RS12205_ptw2795
• UniProt ID: _
• Length: 336 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 336 a.a.
• Molecular weight: 38427.20 Da
• Isoelectric Point: 7.0181

>WP_064585279.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Staphylococcus]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLALAEKLAPNHQVAVYTHADTDHVHNHIVINSIDLETGKKFNNNKQALRNVRNFNDEVCIEHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMNEFKDHLNQHGIEIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRRRQQERDSDTECQPKRPTSSRDESTERDTGVTQSD
WDQFAQDTNELERSRQAAESARLADEKARRDREERERAKQASRRIINNDRENGLEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-242)

Protein structure

No available structure.

Host bacterium

• ID: 8234
• GenBank: NZ_AP017298
• Plasmid name: ptw2795
• Incompatibility group: -
• Plasmid size: 7464 bp
• Coordinate of oriT [Strand]: 3801..3898 [-]
• Host baterium: Staphylococcus capitis strain TW2795

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -