Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 107729 |
| Name | oriT_pGTAFD2016-MI-0253.2  |
| Organism | Salmonella enterica subsp. enterica serovar Senftenberg strain CFIAFB20170120 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP038606 (867..926 [+], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pGTAFD2016-MI-0253.2
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 5193 | GenBank | WP_034169352 |
| Name | Relaxase_EIP71_RS26710_pGTAFD2016-MI-0253.2 |
UniProt ID | _ |
| Length | 498 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 498 a.a. Molecular weight: 55176.27 Da Isoelectric Point: 6.9863
>WP_034169352.1 relaxase/mobilization nuclease domain-containing protein [Salmonella enterica]
MIVKFHPRGRGGGGGPVDYLLGKDRQRDGASVLQGKPEEVRELIDASPYAKKYTSGVLSFAEQDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPEAKQEAAQAITRGLLSLASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAEIESAAADYRRDAESRIQRAREVCQSGTERKREENQRR
HPRPRPEAVLSHEPTHERDAAYDQPDVADHSPGLRATDRLERGHSVVAGATDTRQLHDHPGTEEHAGHAF
REEQRRPAHDLRGGETPLREGEPGSGKIRRGFELDDTGGEIAHDGTGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWAYATGERGAERARHGLEQAGAEFERSAAPIVARLNGIEAHREQERAAQHQKALELERSQR
QKGFELGM
MIVKFHPRGRGGGGGPVDYLLGKDRQRDGASVLQGKPEEVRELIDASPYAKKYTSGVLSFAEQDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPEAKQEAAQAITRGLLSLASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAEIESAAADYRRDAESRIQRAREVCQSGTERKREENQRR
HPRPRPEAVLSHEPTHERDAAYDQPDVADHSPGLRATDRLERGHSVVAGATDTRQLHDHPGTEEHAGHAF
REEQRRPAHDLRGGETPLREGEPGSGKIRRGFELDDTGGEIAHDGTGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWAYATGERGAERARHGLEQAGAEFERSAAPIVARLNGIEAHREQERAAQHQKALELERSQR
QKGFELGM
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 2363 | GenBank | WP_024191642 |
| Name | WP_024191642_pGTAFD2016-MI-0253.2 |
UniProt ID | _ |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11839.65 Da Isoelectric Point: 7.8963
>WP_024191642.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Bacteria]
MLTMWVTEDEHRRLLERCEGKQLAAWMRQICLDEKPSRAGKLPSISPALLRQLAGMGNNLNQIARQVNAG
GGTGHDRVQVVAVLMAIDAGLERLRHAVLEKGADDDR
MLTMWVTEDEHRRLLERCEGKQLAAWMRQICLDEKPSRAGKLPSISPALLRQLAGMGNNLNQIARQVNAG
GGTGHDRVQVVAVLMAIDAGLERLRHAVLEKGADDDR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 8164 | GenBank | NZ_CP038606 |
| Plasmid name | pGTAFD2016-MI-0253.2 | Incompatibility group | Col440II |
| Plasmid size | 4018 bp | Coordinate of oriT [Strand] | 867..926 [+] |
| Host baterium | Salmonella enterica subsp. enterica serovar Senftenberg strain CFIAFB20170120 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |