Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107683
Name   oriT_ANYA 19083|unnamed4 in_silico
Organism   Aeromonas veronii strain ANYA 19083
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP121828 (2897..2925 [-], 29 nt)
oriT length   29 nt
IRs (inverted repeats)      2..9, 13..20  (GACTTTAC..GTAAAGTC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 29 nt

>oriT_ANYA 19083|unnamed4
CGACTTTACGAAGTAAAGTCTAGTGAGTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   5162 GenBank   WP_281441153
Name   mobV_QBS13_RS00025_ANYA 19083|unnamed4 insolico UniProt ID   _
Length   336 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 336 a.a.        Molecular weight: 37469.09 Da        Isoelectric Point: 10.4903

>WP_281441153.1 MobV family relaxase [Aeromonas veronii]
MAAFAIMRCKKLSGMGSVAASLKHCFRERDTPNADPERLRHNMHMAARSTDEAMGKLREKLPEKRRKDAV
LAIEYVLSASPEWWINAGSGQRADFYQSSMDWLAEKYGRENILVSSVHLDEKTPHMSAFVVPITKDGRLS
AKEFIGNRTKMSNDQSSYAEAVKHLGLVRGIEGSKATHKRIKAHYNALGQQIPVPPEIGEADLKPRSSRG
EGLLGKIGLMPMIETPLGVADRLNAKFAKAFKVVAEKASESDSQRVEAVKARMALADTQKRLQALQEPFK
GLSKEQVAEVLKQAVAMQQDNQRRQQEQDLARKLEAEIRRKMAPDKGPKPSRGFGR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-185)


  Protein structure



No available structure.




Host bacterium

ID   8118 GenBank   NZ_CP121828
Plasmid name   ANYA 19083|unnamed4 Incompatibility group   -
Plasmid size   3667 bp Coordinate of oriT [Strand]   2897..2925 [-]
Host baterium   Aeromonas veronii strain ANYA 19083

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -