Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107649
Name   oriT_p14AME19-4 in_silico
Organism   Staphylococcus shinii strain 14AME19
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP068716 (8982..9079 [+], 98 nt)
oriT length   98 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 98 nt

>oriT_p14AME19-4
TCGGCCGAAACTTTGAATATGAGTGTGCCGAATTTCGTTAAGAAAAAGGCACATGGGAGTCGATTGGTAGCGCCCAAATTTGATAAAGAGACGCGACA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   5142 GenBank   WP_202847994
Name   Rep_trans_JMB28_RS14370_p14AME19-4 insolico UniProt ID   _
Length   309 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 309 a.a.        Molecular weight: 37344.81 Da        Isoelectric Point: 9.2033

>WP_202847994.1 replication initiation factor domain-containing protein [Staphylococcus shinii]
MCKKSGSKYVGTYSGTLKGHWSNSRLNRHTMYTPEPKLSFDAMTIVGNLNKNNAHKLSEFMSIEPQIRLW
DILQTKFKAKALQEKVYIEYDKVKADTWDRRNMRVEFNPNKLTHEEMLWLKQNIIDYMEDDGFTRLDLAF
DFEDDLSDYYAMTDKAVKKTIFYGRNGKPETKYFGVRDSDRFIRIYIKKQERKDNADIEVMSEHLWRVEI
ELKRGMVDYWNDCFNDLHILQPDWKTIERTSDRAMVFMLLNDEEEWGKLERRTKNKYKKLIKEISPIDLT
DLMKLTLKANEKQLQKQIDFWQREFRFWK

  Protein domains


Predicted by InterproScan.

Replication initiation factor (Rep_trans)

(133-289)


  Protein structure



No available structure.




Host bacterium

ID   8084 GenBank   NZ_CP068716
Plasmid name   p14AME19-4 Incompatibility group   -
Plasmid size   9771 bp Coordinate of oriT [Strand]   8982..9079 [+]
Host baterium   Staphylococcus shinii strain 14AME19

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -