Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   107635
Name   oriT_pMLSU343b in_silico
Organism   Mesorhizobium loti strain SU343
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP033370 (5674..5697 [-], 24 nt)
oriT length   24 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site  
 
 _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 24 nt

>oriT_pMLSU343b
TTGCGAAGCAATGTATAAGTGCGC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase


ID   5129 GenBank   WP_064983645
Name   mobQ_EFV37_RS35305_pMLSU343b insolico UniProt ID   A0A6M7TX24
Length   415 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 415 a.a.        Molecular weight: 47853.42 Da        Isoelectric Point: 11.6047

>WP_064983645.1 MULTISPECIES: MobQ family relaxase [Mesorhizobium]
MAIYHFSGQVLGRTSKRNPDGSWRPGSKVVAAAAYRSGERLDDAKHRETHDYSRRHGVVHAEILTPPGSA
PWLGDRQLLWNTVEAMEERKDAQLAREFNMALPFELSHEDRVELVRDFAEIHFVRRGMVADIALHNPNPE
DGQSEKNFHAHMMLTMRRATASGLDPVKTREWNSKELLKTWRAEWELACNRALERAGKKTRIDHRTLVAQ
RDAALAAGDRARAAQLNRAPEIHVGPRARQMARQGRPPASQVREVGAYRKKAPAAPAKRRERDYPSRDSG
TRLSFLEKILSGNNEQYRRNVKAINHRFDRMSRKVDYWQRRATFYAEGKIMGKEFRFNRWKAADAAKQSE
AAMRQRAAHARKRLQQLESVMKLLEGILTTTTRRREIGLVRVREVEGWIRSVRSRGRPSGRGRRR

  Protein domains


Predicted by InterproScan.

(29-243)


  Protein structure


Source ID Structure
AlphaFold DB A0A6M7TX24


T4CP


ID   5365 GenBank   WP_064983647
Name   t4cp2_EFV37_RS35310_pMLSU343b insolico UniProt ID   _
Length   537 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 537 a.a.        Molecular weight: 58018.38 Da        Isoelectric Point: 10.0779

>WP_064983647.1 MULTISPECIES: type IV secretory system conjugative DNA transfer family protein [Mesorhizobium]
MDVLQAIATGIFAVIRGALWLVWIILTSPARYRRYVRRKGGSHGSSRWAGRFEQIWHGAVRGEGVILGRG
AFGRLIRFSKDGMVMVFATMGAGKGLGVVIPSLLTYRGSMVVTDPKGENYAITRRRRATLGQVRMLNPTD
PHHSDRFNPMDIIRAGTPSEADDAQALASLMVTPSGRDEHWDNKAISLLKALILHTLHEPLASRNLAGVR
RLSVGSSATFIASLEEIAESSPSLAARETAAGALTSSVGKDGQFSEEFSSILSNLQKATEPWSAGAPAGV
LSASSTFALSELVSSVSTLYLCVDEDVLEVYGTWLRVMVGCTLKTLTRAKTAPPRRKVVLLLDEVAVLGR
LDPLERQAGLLRAYCTPVLIWQNLPQVRRIYGDGAAAFLANSSARVFFGVNDNDTAEYVATMLGNTTSMS
SSTGVSQSSGAWERTNRQNGLSESGYWLLDAAEVQRLPLHHAIVKFRHVPYPVFGRRIDYRKIWRWSGLW
DAWQGTPPAGVNSIPVMSVATPTGSAHVLPIAPLPPSAEGGLSAGSS

  Protein domains


Predicted by InterproScan.

(72-467)

  Protein structure



No available structure.




Host bacterium


ID   8070 GenBank   NZ_CP033370
Plasmid name   pMLSU343b Incompatibility group   -
Plasmid size   23770 bp Coordinate of oriT [Strand]   5674..5697 [-]
Host baterium   Mesorhizobium loti strain SU343

Cargo genes


Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -