Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 107635 |
| Name | oriT_pMLSU343b  |
| Organism | Mesorhizobium loti strain SU343 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP033370 (5674..5697 [-], 24 nt) |
| oriT length | 24 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 24 nt
>oriT_pMLSU343b
TTGCGAAGCAATGTATAAGTGCGC
TTGCGAAGCAATGTATAAGTGCGC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 5129 | GenBank | WP_064983645 |
| Name | mobQ_EFV37_RS35305_pMLSU343b |
UniProt ID | A0A6M7TX24 |
| Length | 415 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 415 a.a. Molecular weight: 47853.42 Da Isoelectric Point: 11.6047
>WP_064983645.1 MULTISPECIES: MobQ family relaxase [Mesorhizobium]
MAIYHFSGQVLGRTSKRNPDGSWRPGSKVVAAAAYRSGERLDDAKHRETHDYSRRHGVVHAEILTPPGSA
PWLGDRQLLWNTVEAMEERKDAQLAREFNMALPFELSHEDRVELVRDFAEIHFVRRGMVADIALHNPNPE
DGQSEKNFHAHMMLTMRRATASGLDPVKTREWNSKELLKTWRAEWELACNRALERAGKKTRIDHRTLVAQ
RDAALAAGDRARAAQLNRAPEIHVGPRARQMARQGRPPASQVREVGAYRKKAPAAPAKRRERDYPSRDSG
TRLSFLEKILSGNNEQYRRNVKAINHRFDRMSRKVDYWQRRATFYAEGKIMGKEFRFNRWKAADAAKQSE
AAMRQRAAHARKRLQQLESVMKLLEGILTTTTRRREIGLVRVREVEGWIRSVRSRGRPSGRGRRR
MAIYHFSGQVLGRTSKRNPDGSWRPGSKVVAAAAYRSGERLDDAKHRETHDYSRRHGVVHAEILTPPGSA
PWLGDRQLLWNTVEAMEERKDAQLAREFNMALPFELSHEDRVELVRDFAEIHFVRRGMVADIALHNPNPE
DGQSEKNFHAHMMLTMRRATASGLDPVKTREWNSKELLKTWRAEWELACNRALERAGKKTRIDHRTLVAQ
RDAALAAGDRARAAQLNRAPEIHVGPRARQMARQGRPPASQVREVGAYRKKAPAAPAKRRERDYPSRDSG
TRLSFLEKILSGNNEQYRRNVKAINHRFDRMSRKVDYWQRRATFYAEGKIMGKEFRFNRWKAADAAKQSE
AAMRQRAAHARKRLQQLESVMKLLEGILTTTTRRREIGLVRVREVEGWIRSVRSRGRPSGRGRRR
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A6M7TX24 |
T4CP
| ID | 5365 | GenBank | WP_064983647 |
| Name | t4cp2_EFV37_RS35310_pMLSU343b |
UniProt ID | _ |
| Length | 537 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 537 a.a. Molecular weight: 58018.38 Da Isoelectric Point: 10.0779
>WP_064983647.1 MULTISPECIES: type IV secretory system conjugative DNA transfer family protein [Mesorhizobium]
MDVLQAIATGIFAVIRGALWLVWIILTSPARYRRYVRRKGGSHGSSRWAGRFEQIWHGAVRGEGVILGRG
AFGRLIRFSKDGMVMVFATMGAGKGLGVVIPSLLTYRGSMVVTDPKGENYAITRRRRATLGQVRMLNPTD
PHHSDRFNPMDIIRAGTPSEADDAQALASLMVTPSGRDEHWDNKAISLLKALILHTLHEPLASRNLAGVR
RLSVGSSATFIASLEEIAESSPSLAARETAAGALTSSVGKDGQFSEEFSSILSNLQKATEPWSAGAPAGV
LSASSTFALSELVSSVSTLYLCVDEDVLEVYGTWLRVMVGCTLKTLTRAKTAPPRRKVVLLLDEVAVLGR
LDPLERQAGLLRAYCTPVLIWQNLPQVRRIYGDGAAAFLANSSARVFFGVNDNDTAEYVATMLGNTTSMS
SSTGVSQSSGAWERTNRQNGLSESGYWLLDAAEVQRLPLHHAIVKFRHVPYPVFGRRIDYRKIWRWSGLW
DAWQGTPPAGVNSIPVMSVATPTGSAHVLPIAPLPPSAEGGLSAGSS
MDVLQAIATGIFAVIRGALWLVWIILTSPARYRRYVRRKGGSHGSSRWAGRFEQIWHGAVRGEGVILGRG
AFGRLIRFSKDGMVMVFATMGAGKGLGVVIPSLLTYRGSMVVTDPKGENYAITRRRRATLGQVRMLNPTD
PHHSDRFNPMDIIRAGTPSEADDAQALASLMVTPSGRDEHWDNKAISLLKALILHTLHEPLASRNLAGVR
RLSVGSSATFIASLEEIAESSPSLAARETAAGALTSSVGKDGQFSEEFSSILSNLQKATEPWSAGAPAGV
LSASSTFALSELVSSVSTLYLCVDEDVLEVYGTWLRVMVGCTLKTLTRAKTAPPRRKVVLLLDEVAVLGR
LDPLERQAGLLRAYCTPVLIWQNLPQVRRIYGDGAAAFLANSSARVFFGVNDNDTAEYVATMLGNTTSMS
SSTGVSQSSGAWERTNRQNGLSESGYWLLDAAEVQRLPLHHAIVKFRHVPYPVFGRRIDYRKIWRWSGLW
DAWQGTPPAGVNSIPVMSVATPTGSAHVLPIAPLPPSAEGGLSAGSS
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 8070 | GenBank | NZ_CP033370 |
| Plasmid name | pMLSU343b | Incompatibility group | - |
| Plasmid size | 23770 bp | Coordinate of oriT [Strand] | 5674..5697 [-] |
| Host baterium | Mesorhizobium loti strain SU343 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |