Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 107632 |
| Name | oriT_FDAARGOS_1069|unnamed  |
| Organism | Staphylococcus pasteuri strain FDAARGOS_1069 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP067015 (4234..4353 [+], 120 nt) |
| oriT length | 120 nt |
| IRs (inverted repeats) | 52..58, 62..68 (TTGGGGA..TCCCCAA) 22..29, 34..41 (ATTTTTTC..GAAAAAAT) 1..8, 14..21 (AGTGGCTA..TAGCCACT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 120 nt
>oriT_FDAARGOS_1069|unnamed
AGTGGCTATCAATTAGCCACTATTTTTTCGTTAGAAAAAATCCTAAGGGGCTTGGGGATGTTCCCCAACAAGCAGGCGACGCTAACACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA
AGTGGCTATCAATTAGCCACTATTTTTTCGTTAGAAAAAATCCTAAGGGGCTTGGGGATGTTCCCCAACAAGCAGGCGACGCTAACACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 5127 | GenBank | WP_200271366 |
| Name | Relaxase_I6I26_RS12135_FDAARGOS_1069|unnamed |
UniProt ID | _ |
| Length | 336 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 336 a.a. Molecular weight: 38487.28 Da Isoelectric Point: 6.9293
>WP_200271366.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus pasteuri]
MATTKISATKSTSRAINYAEERAVEKSGLNCDVDYAKSSFKATRELYGKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLALAEKLVPNHQVAVYTHNDTDHVHNHIVINSIDLETGKKFNNNKQALRNVRNFNDEVCMEHGL
SVPEKNTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMDEFKDHLNQHGIEIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRRRQQERDSDTECQPKRPTSNRDEATEQDTGVTQSD
WDQFAQDTNELERSRQAAESARLAHEKARRDREERARAKQASRRIINNDRDHGLEL
MATTKISATKSTSRAINYAEERAVEKSGLNCDVDYAKSSFKATRELYGKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLALAEKLVPNHQVAVYTHNDTDHVHNHIVINSIDLETGKKFNNNKQALRNVRNFNDEVCMEHGL
SVPEKNTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMDEFKDHLNQHGIEIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRRRQQERDSDTECQPKRPTSNRDEATEQDTGVTQSD
WDQFAQDTNELERSRQAAESARLAHEKARRDREERARAKQASRRIINNDRDHGLEL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 8067 | GenBank | NZ_CP067015 |
| Plasmid name | FDAARGOS_1069|unnamed | Incompatibility group | - |
| Plasmid size | 7946 bp | Coordinate of oriT [Strand] | 4234..4353 [+] |
| Host baterium | Staphylococcus pasteuri strain FDAARGOS_1069 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |