Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 107614
• Name: oriT_CS2108|unnamed
• Organism: Streptococcus agalactiae strain CS2108
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP123970 (1885..1925 [+], 41 nt)
• oriT length: 41 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 41 nt

>oriT_CS2108|unnamed
CACTTTTACGAAGTAAAGTATAGTGCGTTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_QGO80_RS11015_CS2108|unnamed

• ID: 5118
• GenBank: WP_017648609
• Name: mobV_QGO80_RS11015_CS2108|unnamed
• UniProt ID: _
• Length: 499 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 499 a.a.
• Molecular weight: 58383.95 Da
• Isoelectric Point: 5.7476

>WP_017648609.1 MobV family relaxase [Streptococcus agalactiae]
MSYMVARMQKMKAGNLGGAYKHNERVFETHSNKDIDPSRSHLNYELTDRDHSVSYEKQIKDYVNENKISN
RAIRKDAVLCDEWIITSDKSFFEKLSEGETREFFETAKNYFAENYGEDNIAYASVHLDESTPHMHMGVVP
FQDGKLSSKAMFDKEELKKIQEDLPKYMNEHGFELERGELNSEAKHKTVAEFKQEMAGKEIEKQLVLEYG
APEYLNHQEEFVTKEEYQEAYEVFQNELGSLFGGGEFSWRETTFQEKLDWVKERQREEVERLVEARKPLE
DEIRALNEFLREKYEEVDKIELRASESLSELSEAEGYINTLEKHSNALESKIGGLENEYLRLAKQNARLS
DLKIMSEKELAEIQPKKGMFGKEHVELTKEQFEKFKGLIYRSKNLVHEKELENDQLKRQMPLRSSKNGFE
ASLQRAKDKTKGESIERLKSEIRGLKNENSVLRQQNDKMLGKLREFMPDKALKNFVSELKAIQPIVKIVK
RVIEKRLGL

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-194)

Protein structure

No available structure.

Host bacterium

• ID: 8049
• GenBank: NZ_CP123970
• Plasmid name: CS2108|unnamed
• Incompatibility group: -
• Plasmid size: 4440 bp
• Coordinate of oriT [Strand]: 1885..1925 [+]
• Host baterium: Streptococcus agalactiae strain CS2108

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -