Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 107568 |
| Name | oriT_pZ2-336  |
| Organism | Streptococcus agalactiae strain MRIZ2-336 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_MW118670 (1231..1268 [+], 38 nt) |
| oriT length | 38 nt |
| IRs (inverted repeats) | 1..6, 10..15 (CTTTAC..GTAAAG) |
| Location of nic site | 24..25 |
| Conserved sequence flanking the nic site |
GTGTGTTATA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 38 nt
>oriT_pZ2-336
CTTTACGAAGTAAAGTATAGTGTGTTATACTTTACATG
CTTTACGAAGTAAAGTATAGTGTGTTATACTTTACATG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 5082 | GenBank | WP_248297978 |
| Name | mobV_M2411_RS00015_pZ2-336 |
UniProt ID | _ |
| Length | 578 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 578 a.a. Molecular weight: 67480.40 Da Isoelectric Point: 5.4941
>WP_248297978.1 MobV family relaxase [Streptococcus agalactiae]
MFWGCDMSFAVARMQKMKVGNLGGAYKHNERVFKNHANKDIDTEKSDLNYELTDRNRSISYEKQITDYVN
DNKISDRAIRKDAVLCDEWIITSDSTFFENLSPERTREYFEANKQYFAENFGDSNIAYASVHMDESTPHM
HLGIVPMENGKLSSKAMFDKKTLLKIQDELPKYLQDKGFDVERGRELSQAKHMTVSEFKENLATKELHET
LDKMNIPRTESVVEYDDRGALVSVEPKEIGIDKRLDFAKDELSKKQLELSKVREQVKEVKTELIDLEDKS
ARLDIEIEQQEYQFENSVNDYSKSLYKNQYERVNQLSLEKNVVVPANEELKPELVIDDKFDLKRAQELIQ
ALWENLRQAMEKTLEKMFSDREKEITAKESKLDQKFDQLAEREQFVAEKEKSLNAVEEHLEEQLADIQEQ
RERIQKANEIVKENGSRIVEREKELDRLNPQIKKWELEFEKQSDIKFKKSPLGKETVTMSKDDYLKIKKD
SVGKNTQISNMYTKLNQLRKYEQNSKDIFSNKLKANKELNPIKKKADLFDALKERSLSVPSLAKEISEVQ
SLANPVKKLATGIIRSQM
MFWGCDMSFAVARMQKMKVGNLGGAYKHNERVFKNHANKDIDTEKSDLNYELTDRNRSISYEKQITDYVN
DNKISDRAIRKDAVLCDEWIITSDSTFFENLSPERTREYFEANKQYFAENFGDSNIAYASVHMDESTPHM
HLGIVPMENGKLSSKAMFDKKTLLKIQDELPKYLQDKGFDVERGRELSQAKHMTVSEFKENLATKELHET
LDKMNIPRTESVVEYDDRGALVSVEPKEIGIDKRLDFAKDELSKKQLELSKVREQVKEVKTELIDLEDKS
ARLDIEIEQQEYQFENSVNDYSKSLYKNQYERVNQLSLEKNVVVPANEELKPELVIDDKFDLKRAQELIQ
ALWENLRQAMEKTLEKMFSDREKEITAKESKLDQKFDQLAEREQFVAEKEKSLNAVEEHLEEQLADIQEQ
RERIQKANEIVKENGSRIVEREKELDRLNPQIKKWELEFEKQSDIKFKKSPLGKETVTMSKDDYLKIKKD
SVGKNTQISNMYTKLNQLRKYEQNSKDIFSNKLKANKELNPIKKKADLFDALKERSLSVPSLAKEISEVQ
SLANPVKKLATGIIRSQM
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 8003 | GenBank | NZ_MW118670 |
| Plasmid name | pZ2-336 | Incompatibility group | - |
| Plasmid size | 3973 bp | Coordinate of oriT [Strand] | 1231..1268 [+] |
| Host baterium | Streptococcus agalactiae strain MRIZ2-336 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |