Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 107567
• Name: oriT1_pCCH208
• Organism: Streptococcus agalactiae
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NC_024973 (2386..2427 [+], 42 nt)
• oriT length: 42 nt
• IRs (inverted repeats): 16..23, 29..36 (AAAGTATA..TATACTTT) 4..9, 12..17 (TTATAT..ATATAA)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 42 nt

>oriT1_pCCH208
CACTTATATGAATATAAAGTATAGTATGTATACTTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_HTC67_RS00025_pCCH208

• ID: 5081
• GenBank: WP_014072567
• Name: mobV_HTC67_RS00025_pCCH208
• UniProt ID: G3ER43
• Length: 500 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 500 a.a.
• Molecular weight: 58463.75 Da
• Isoelectric Point: 6.0256

>WP_014072567.1 MULTISPECIES: MobV family relaxase [Streptococcus]
MSYLVARMQKMKVGNLGGAYRHNERVFENHSNKDIDTSRSHLNYELTDRDRSVSYEKQIKDYVNEKKSSK
RAIRKDAVLCDEWIITSDKDFFERLDQEQTRAFFETAKNYFAERYGLENIAYASVHLDESTPHMHMGVVP
MVDGKLSSKAVFTREELKAIQEELPKYMNEQGFELSRGQLGSDKKHLSVADYKAKIGKEALNKELLGLGA
PRYWHKEEDRPATAEEIAGYESLASLFAGEEMKLREATLEERFTWLDSHRNDLKGDLSHLEELVDKKIEE
YTRIDSEASERLSELSELNSKVKDREKELRGLESDSERLSDKVVRLEKEHRETTQLLVEQNRNLRKISFQ
DLDRRRIAEDLHEELEKATPKLFGGSFNFTADFVGRLKTFMSEVVEKLEQVINQNEVLRKALEGMKQAKE
RAERELLQEEWKTQRLETENQNLRQENKELKVSKNLLEDIQEVITEKEVSSLNKRLDELREARMASKRGY
EPKRSKGRSI

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-194)

Protein structure

• AlphaFold DB: G3ER43

Host bacterium

• ID: 8002
• GenBank: NC_024973
• Plasmid name: pCCH208
• Incompatibility group: -
• Plasmid size: 4972 bp
• Coordinate of oriT [Strand]: 2386..2427 [+]; 1060..1097 [+]
• Host baterium: Streptococcus agalactiae

Cargo genes

• Drug resistance gene: erm(T)
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -