Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107562
Name   oriT_pSWS372 in_silico
Organism   Staphylococcus aureus
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_024964 (3768..3802 [-], 35 nt)
oriT length   35 nt
IRs (inverted repeats)      14..20, 27..33  (AAGTCTA..TAGACTT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 35 nt

>oriT_pSWS372
TTACGAAGTAAATAAGTCTAGTGTGTTAGACTTTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   5076 GenBank   WP_031942284
Name   mobV_HXG51_RS00025_pSWS372 insolico UniProt ID   A0A068R8C3
Length   334 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 334 a.a.        Molecular weight: 39230.96 Da        Isoelectric Point: 8.9589

>WP_031942284.1 MobV family relaxase [Staphylococcus aureus]
MSYSILRVERVKGSGNTKGLQKHNQRENNNYNNKDIRHEDTHKNYDLIHEKNVDYNQLISDKIDSNYTGN
RKIRKDAIRHVEGIITSDEKFFNRLSEEETHQFFKDSLDFAKQEYGEENILYATVHLDEKVPHMHFGFVP
LTDDGRLSAKEKLGNKKAMTELQDRFNHHVNSRGYGLERGTAKQVSEREHKHIDKFKKDTQFHKQELQTV
KSDLKKLDSQLNAHISDLRVTSDFEYENEVEVKKGLFKAGEKLETGRKVISAEEFERIQRTVIAASNIVD
DYEKIRETDFFKENEELKSKNLKYAAFSIETNKENEKLKKRMKSIKSCLLSIRN

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-198)


  Protein structure


Source ID Structure
AlphaFold DB A0A068R8C3


Host bacterium

ID   7997 GenBank   NC_024964
Plasmid name   pSWS372 Incompatibility group   -
Plasmid size   3982 bp Coordinate of oriT [Strand]   3768..3802 [-]
Host baterium   Staphylococcus aureus

Cargo genes

Drug resistance gene   erm(C)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -