Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107550
Name   oriT_pTDC-A in_silico
Organism   Tetragenococcus halophilus
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_024990 (5693..5713 [-], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_pTDC-A
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   5064 GenBank   WP_031944077
Name   mobQ_HXD33_RS00055_pTDC-A insolico UniProt ID   A0A077KBA1
Length   683 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 683 a.a.        Molecular weight: 80553.39 Da        Isoelectric Point: 8.9922

>WP_031944077.1 MobQ family relaxase [Tetragenococcus halophilus]
MAIFHMNFTNISASDGRSAVASASYRSGEKLYNEQEGKTYFYPRNVQPDAFILTPEHAPEWTKNRQKLWN
EVEAKDRKANSRYAKEFNVALPVELSHEEQKSLLKHYVQENFVDQGMVADIAIHRDKQENPHAHVMLTNR
PFNLDGTWSVKSKKEYLLDDQGNKTYTGNSKYPKSRKILTTDWDKKEKIAEWRHNWAETVNQKLEEKKLP
DRISEKSYQDQGIGKQATIHEGYHRGKNERKNYNKTLKEIESAKAEKENIQEKINHKEQFNALKDHLSFE
EKHIVSNLSKELKTYINLENIENKERMLFHWKNSLFIKHAVGEDVAQELQTVNRQEYSMEEANHLLNKVT
DRTVQKIYPNVNFNQTTQAERRELIKESESENRIFEGNELDDRLTSIRENLLDQQITVFTKRPYASWKIL
EKQGEKAQKIIDKTLAKYNETMEDMKNIEKGHFSKYDNQDRKAITDNTKNLMTINKIKNIVQEHYDMVLE
KSLPNADFYNINMAEKEQFYSAIVYYNSELKPLDINQINKLKEETPQMFNSIEHRKGLNYLNGHLEAKDL
GNEKLKNVLKHDGTRQLFLSECKKDNHISSDQVENVKQNLKQQQQKQDNYRKQVMTDYEPVNYKEVSNEE
YLQKVLSNTMMSLLYASGRSNVDKKQRKDTEWEMTKKQRENQKGRSSSNGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure


Source ID Structure
AlphaFold DB A0A077KBA1


Host bacterium

ID   7985 GenBank   NC_024990
Plasmid name   pTDC-A Incompatibility group   -
Plasmid size   27115 bp Coordinate of oriT [Strand]   5693..5713 [-]
Host baterium   Tetragenococcus halophilus

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21