Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107549
Name   oriT_pQJ012 in_silico
Organism   Weissella confusa strain QJ012
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_KR973434 (291..323 [-], 33 nt)
oriT length   33 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 33 nt

>oriT_pQJ012
ACCGCCCAATTTTGGAGTGGTGTGTAAGTGCGC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   5063 GenBank   WP_172686063
Name   Rep_trans_HTF22_RS00005_pQJ012 insolico UniProt ID   _
Length   282 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 282 a.a.        Molecular weight: 32971.18 Da        Isoelectric Point: 5.0156

>WP_172686063.1 replication initiation factor domain-containing protein [Weissella confusa]
MPTNQVSIDRITVSGELKAEYLELQRVMNALGSSWELSGGVFRLIREYPNGDTENIAYYAENAFQAGSWR
LDFNPNKLTDEEKLEMKRAIDLLADVHFTRLDLAFDVFNNELGMKYRIYRPNVSQREYGVYTAQWTKAVE
TIYYGSNSSDQQIRQYNKLVEQTKKNMPLPDGVEHWMRLELQLRGRKPAEWVDCAKSMLADFRLPNYDNI
KSVNDKLALAGLDSQFVDWSDFAKEKRARLRKLQKEQYDDTLARELFDLLIAHQERLHGELTSYLAEFDI
QE

  Protein domains


Predicted by InterproScan.

Replication initiation factor (Rep_trans)

(97-193)


  Protein structure



No available structure.




Host bacterium

ID   7984 GenBank   NZ_KR973434
Plasmid name   pQJ012 Incompatibility group   -
Plasmid size   1489 bp Coordinate of oriT [Strand]   291..323 [-]
Host baterium   Weissella confusa strain QJ012

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -