Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107548
Name   oriT_pJY33 in_silico
Organism   Weissella cibaria
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_025129 (26..61 [+], 36 nt)
oriT length   36 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 36 nt

>oriT_pJY33
ACCGCCCAACTTTGGAGTGGTGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   5061 GenBank   WP_032072047
Name   Rep_trans_HTC08_RS00010_pJY33 insolico UniProt ID   W5ZW02
Length   282 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 282 a.a.        Molecular weight: 33286.62 Da        Isoelectric Point: 5.3084

>WP_032072047.1 replication initiation factor domain-containing protein [Weissella cibaria]
MPTNQVSIDRITVSGELKAEYRELQRVMNALGSSWELSDGVFRLIREYPNGDTENIAYYAENAFQSGSWR
LDFNPNKLADEEKLEMNRAIYLLTDVHFTRLDLAFDVFNNELGMKYRIYRPNVSQREYGVYMAQWTKAVE
TIYYGSNSSEQQIRQYNKLVEQTKKKMPLPDGVDHWMRLELQLRGRKPAEWVERAKDMLGDFRLPNYDNI
KSVNDKMALHSLEIGLVNWSDFAKEKRARLRKLQKEQYDDTLAQELFDLLIAHQERLRGELTSYLAEFDI
QE

  Protein domains


Predicted by InterproScan.

Replication initiation factor (Rep_trans)

(97-193)


  Protein structure


Source ID Structure
AlphaFold DB W5ZW02


Host bacterium

ID   7983 GenBank   NC_025129
Plasmid name   pJY33 Incompatibility group   -
Plasmid size   2365 bp Coordinate of oriT [Strand]   26..61 [+]
Host baterium   Weissella cibaria

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -