Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 107482
• Name: oriT_pCPS49
• Organism: Staphylococcus aureus
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NC_019142 (1894..1918 [+], 25 nt)
• oriT length: 25 nt
• IRs (inverted repeats): _
• Location of nic site: 14..15
• Conserved sequence flanking the nic site: GTGTGTTATA
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 25 nt

>oriT_pCPS49
TAAGGTATAGTGTGTTATACTTTAC

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_HXF97_RS00010_pCPS49

• ID: 5003
• GenBank: WP_277992153
• Name: mobV_HXF97_RS00010_pCPS49
• UniProt ID: _
• Length: 413 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 413 a.a.
• Molecular weight: 48507.79 Da
• Isoelectric Point: 7.2073

>WP_277992153.1 MobV family relaxase [Staphylococcus aureus]
MVARMQKMKADNLVGIGNHNQRRIDNHSNKDIDVDRSHLNYDLVEGRTENYKRDIEKFINENKASQRATR
KDAVLVNEWIISSDRFFFDELDDKETERFFEDAKDFFAERFGDENIRYAQVHLDERTPHMHLGIVPFDDE
NKLSAKRVFNKAALQEVQEELPKYLNERGFELQRGEKGSDKKHLPVEEYKAYKDAKFDLENEISALEREV
KQRKDEVKKLITGKYGKLDYEKLGVKNQLKTVEVKTGEKNIFGVEKTETKRVKTGNVVMLDENFRLLAKN
YEELVAVKRSFEKYLDTDLIKENKALDKVADEYMEMAYKSSDVANELKAENDRLREENKSLKEQVQSLKQ
EVKSIYHTVRDILKRAMSNSNSVKGLMSVIAEKVSEDVPKPEFGRLDDQERMRERKRTRGMSR

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (2-191)

Protein structure

No available structure.

Host bacterium

• ID: 7917
• GenBank: NC_019142
• Plasmid name: pCPS49
• Incompatibility group: -
• Plasmid size: 5292 bp
• Coordinate of oriT [Strand]: 1894..1918 [+]
• Host baterium: Staphylococcus aureus

Cargo genes

• Drug resistance gene: vga(C)
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -