Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 107452
• Name: oriT_pJD4
• Organism: Neisseria gonorrhoeae
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NC_002098 (4490..4518 [-], 29 nt)
• oriT length: 29 nt
• IRs (inverted repeats): 2..10, 14..22 (CAGTTTCTC..GAGAAACTG)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 29 nt

>oriT_pJD4
CCAGTTTCTCGAAGAGAAACTGATAAGTG

oriT secondary structure

Predicted by RNAfold.

Relaxase

MobA_MobL_HTY21_RS00040_pJD4

• ID: 4991
• GenBank: WP_032490546
• Name: MobA_MobL_HTY21_RS00040_pJD4
• UniProt ID: Q84AT6
• Length: 478 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 478 a.a.
• Molecular weight: 56206.84 Da
• Isoelectric Point: 8.1947

>WP_032490546.1 MULTISPECIES: MobA/MobL family protein [Pseudomonadota]
MAIYHLNVRYCSKSKGQSAQAKNDYINRNDKYSKRLDDLQFSGYGNMPKFAEDNPQEFWRLSDIYERANA
RVCTEIEFALPRELTLEQQQKLVSSFIENTVDSGSNKLPYSFAIHTDKNNHNPHCHLIFSERQLDGIDRT
AEQFFKRANTKSPEKGGAMKTADFRDREFIQSVRKTWREQANQALEQYGYAARIDERSYKEQGIEQAPRA
RIDRVTWQELNRLEQEERQIVQELALKGQEINKEKSYLQKIEEKQAQGMGKYESKFAAAFSKLSESALKH
DLSNEKEKDSKIHTQEEKVPQNRIQGLSQADFDQFLIDEWLPQIEKYVKAQEKRDGMEVEITQYDKDLQR
IQGDYNKLTDKNQGFLGLWETKEQKAKKKELEDEYKHTAEQRNAKSQELAEYSQKIKAYEQKTLEPINEK
IAKYQADNPEIKMRSLGFVKKIKAQGAYKAAQERMEREKQHQQEKQQRHLERESGLSL

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (23-211)

Protein structure

• AlphaFold DB: Q84AT6

Host bacterium

• ID: 7887
• GenBank: NC_002098
• Plasmid name: pJD4
• Incompatibility group: -
• Plasmid size: 7426 bp
• Coordinate of oriT [Strand]: 4490..4518 [-]
• Host baterium: Neisseria gonorrhoeae

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -