Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   107452
Name   oriT_pJD4 in_silico
Organism   Neisseria gonorrhoeae
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_002098 (4490..4518 [-], 29 nt)
oriT length   29 nt
IRs (inverted repeats)      2..10, 14..22  (CAGTTTCTC..GAGAAACTG)
Location of nic site      _
Conserved sequence flanking the
  nic site  
 
 _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 29 nt

>oriT_pJD4
CCAGTTTCTCGAAGAGAAACTGATAAGTG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase


ID   4991 GenBank   WP_032490546
Name   MobA_MobL_HTY21_RS00040_pJD4 insolico UniProt ID   Q84AT6
Length   478 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 478 a.a.        Molecular weight: 56206.84 Da        Isoelectric Point: 8.1947

>WP_032490546.1 MULTISPECIES: MobA/MobL family protein [Pseudomonadota]
MAIYHLNVRYCSKSKGQSAQAKNDYINRNDKYSKRLDDLQFSGYGNMPKFAEDNPQEFWRLSDIYERANA
RVCTEIEFALPRELTLEQQQKLVSSFIENTVDSGSNKLPYSFAIHTDKNNHNPHCHLIFSERQLDGIDRT
AEQFFKRANTKSPEKGGAMKTADFRDREFIQSVRKTWREQANQALEQYGYAARIDERSYKEQGIEQAPRA
RIDRVTWQELNRLEQEERQIVQELALKGQEINKEKSYLQKIEEKQAQGMGKYESKFAAAFSKLSESALKH
DLSNEKEKDSKIHTQEEKVPQNRIQGLSQADFDQFLIDEWLPQIEKYVKAQEKRDGMEVEITQYDKDLQR
IQGDYNKLTDKNQGFLGLWETKEQKAKKKELEDEYKHTAEQRNAKSQELAEYSQKIKAYEQKTLEPINEK
IAKYQADNPEIKMRSLGFVKKIKAQGAYKAAQERMEREKQHQQEKQQRHLERESGLSL

  Protein domains


Predicted by InterproScan.

(23-211)


  Protein structure


Source ID Structure
AlphaFold DB Q84AT6


Host bacterium


ID   7887 GenBank   NC_002098
Plasmid name   pJD4 Incompatibility group   -
Plasmid size   7426 bp Coordinate of oriT [Strand]   4490..4518 [-]
Host baterium   Neisseria gonorrhoeae

Cargo genes


Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -