Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107437
Name   oriT_pEM1 in_silico
Organism   Neisseria gonorrhoeae
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_019211 (1930..1958 [-], 29 nt)
oriT length   29 nt
IRs (inverted repeats)      2..10, 14..22  (CAGTTTCTC..GAGAAACTG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 29 nt

>oriT_pEM1
CCAGTTTCTCGAAGAGAAACTGATAAGTG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4973 GenBank   WP_032490546
Name   MobA_MobL_HS691_RS00020_pEM1 insolico UniProt ID   Q84AT6
Length   478 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 478 a.a.        Molecular weight: 56206.84 Da        Isoelectric Point: 8.1947

>WP_032490546.1 MULTISPECIES: MobA/MobL family protein [Pseudomonadota]
MAIYHLNVRYCSKSKGQSAQAKNDYINRNDKYSKRLDDLQFSGYGNMPKFAEDNPQEFWRLSDIYERANA
RVCTEIEFALPRELTLEQQQKLVSSFIENTVDSGSNKLPYSFAIHTDKNNHNPHCHLIFSERQLDGIDRT
AEQFFKRANTKSPEKGGAMKTADFRDREFIQSVRKTWREQANQALEQYGYAARIDERSYKEQGIEQAPRA
RIDRVTWQELNRLEQEERQIVQELALKGQEINKEKSYLQKIEEKQAQGMGKYESKFAAAFSKLSESALKH
DLSNEKEKDSKIHTQEEKVPQNRIQGLSQADFDQFLIDEWLPQIEKYVKAQEKRDGMEVEITQYDKDLQR
IQGDYNKLTDKNQGFLGLWETKEQKAKKKELEDEYKHTAEQRNAKSQELAEYSQKIKAYEQKTLEPINEK
IAKYQADNPEIKMRSLGFVKKIKAQGAYKAAQERMEREKQHQQEKQQRHLERESGLSL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(23-211)


  Protein structure


Source ID Structure
AlphaFold DB Q84AT6


Host bacterium

ID   7872 GenBank   NC_019211
Plasmid name   pEM1 Incompatibility group   -
Plasmid size   4865 bp Coordinate of oriT [Strand]   1930..1958 [-]
Host baterium   Neisseria gonorrhoeae

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -