Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 107431 |
| Name | oriT_pLM8P2  |
| Organism | Pseudomonas sp. LM8 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_KJ940994 (9724..9757 [-], 34 nt) |
| oriT length | 34 nt |
| IRs (inverted repeats) | 1..7, 11..17 (GTTTCTC..GAGAAAC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 34 nt
>oriT_pLM8P2
GTTTCTCGAAGAGAAACGTTTAAGTGCGCACTCC
GTTTCTCGAAGAGAAACGTTTAAGTGCGCACTCC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 4969 | GenBank | WP_173267149 |
| Name | MobA_MobL_HTD07_RS00060_pLM8P2 |
UniProt ID | _ |
| Length | 734 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 734 a.a. Molecular weight: 82436.75 Da Isoelectric Point: 7.8253
>WP_173267149.1 MobA/MobL family protein [Pseudomonas sp. LM8]
MGYRAHASKGSKSKTGKGLSAAAKHAYHMRADGYSVGRDGPREDVAASGYGHMPSWAHDPADFWLASDSY
ERSNGTLFREFQLNLPVELNLDQQRQIIEAYCARMFDAERLPHSWAIHSPDKGNLNPHAHLMVSETMTDD
FIRPASQHFMRYNSRQPEKGGAKKTRSLKPKSWLMKARAAWAEEANKGLVAAGFKPRFDHRSKAEQRDEA
LRFGDLRRAATLDTLVEEHEGPRIAGMRRRLEAGKVELEKLPEYAQQVIQDNNAVRSYNAAWLALVDQMS
DADLAIHFADELEQINHSAHVAVYVTEQQEQVQVRIDKLRQQLAEPEPEVVGTALKLKADVERLAQELIE
WRKAHPVRSWMANDDEKPVRDARRAYLASPELAQAKQARAERKQAREELSALELRLAELERAATAKPSQE
RNSLWDSYRETWPARDNARELDWANQKASEAARRAKIRADYLHELAAIKADLDKSPTERKAARSLAQMRR
ALESHALYQRIATERQALKRKHRQPGRDGYKVYLLVLSNDGHAGALAELRRQQSKPKKPSAAGNAFSAEA
ELFPSAPVLLPSVTYRVDLRGNVTYYSSHDQDQAILVDSGRLVQVLDQSEVAVETGLRLALQKFGQQLDV
HGSPEFKAAVLGVVLRTGLRVEFKDPALATELERLRGASSQMAQVPKVMPITPKTEQEIEAEYAGEVYEG
ELGRGDAEMPDSLMTESEDETAVSSPSVKPTRLN
MGYRAHASKGSKSKTGKGLSAAAKHAYHMRADGYSVGRDGPREDVAASGYGHMPSWAHDPADFWLASDSY
ERSNGTLFREFQLNLPVELNLDQQRQIIEAYCARMFDAERLPHSWAIHSPDKGNLNPHAHLMVSETMTDD
FIRPASQHFMRYNSRQPEKGGAKKTRSLKPKSWLMKARAAWAEEANKGLVAAGFKPRFDHRSKAEQRDEA
LRFGDLRRAATLDTLVEEHEGPRIAGMRRRLEAGKVELEKLPEYAQQVIQDNNAVRSYNAAWLALVDQMS
DADLAIHFADELEQINHSAHVAVYVTEQQEQVQVRIDKLRQQLAEPEPEVVGTALKLKADVERLAQELIE
WRKAHPVRSWMANDDEKPVRDARRAYLASPELAQAKQARAERKQAREELSALELRLAELERAATAKPSQE
RNSLWDSYRETWPARDNARELDWANQKASEAARRAKIRADYLHELAAIKADLDKSPTERKAARSLAQMRR
ALESHALYQRIATERQALKRKHRQPGRDGYKVYLLVLSNDGHAGALAELRRQQSKPKKPSAAGNAFSAEA
ELFPSAPVLLPSVTYRVDLRGNVTYYSSHDQDQAILVDSGRLVQVLDQSEVAVETGLRLALQKFGQQLDV
HGSPEFKAAVLGVVLRTGLRVEFKDPALATELERLRGASSQMAQVPKVMPITPKTEQEIEAEYAGEVYEG
ELGRGDAEMPDSLMTESEDETAVSSPSVKPTRLN
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 7866 | GenBank | NZ_KJ940994 |
| Plasmid name | pLM8P2 | Incompatibility group | - |
| Plasmid size | 22750 bp | Coordinate of oriT [Strand] | 9724..9757 [-] |
| Host baterium | Pseudomonas sp. LM8 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | srpC |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |