Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107430
Name   oriT_pZM1P1 in_silico
Organism   Pseudomonas sp. ZM1
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_KJ940992 (4211..4242 [+], 32 nt)
oriT length   32 nt
IRs (inverted repeats)      4..9, 13..18  (GCAAAC..GTTTGC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 32 nt

>oriT_pZM1P1
CACGCAAACGAAGTTTGCATAAGTGCGCCCTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4968 GenBank   WP_218192223
Name   mobQ_HTC96_RS00060_pZM1P1 insolico UniProt ID   _
Length   673 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 673 a.a.        Molecular weight: 75413.23 Da        Isoelectric Point: 6.8761

>WP_218192223.1 MULTISPECIES: MobQ family relaxase [unclassified Pseudomonas]
MAIYSASVKTISRSGGRSATAAAAYRTGEEVADQRTGEVHDYRRRGGVVGVSMLLPEGVAAMSTAELWNL
AEGAEKRKNATVARELLVALPHELDTAQRQALAEAIAGDLVERYQVGAQVAVHLPDAEGDNRNHHAHILF
TTRRLGPAGLGEKTRELDDIKRGPEEVQWIRAMVEGRTNAALEAAGHAERVDRRSLADQHAAALEAGDQV
AAMATDRAPTIHDGPAITAARREAERRGEPAPDLDKLARSDLRRDQRELAQVSAQIYEWEVMAERRAQAE
QARRLVPDPAPAPAQIHDLAEEREQRGLPAVEQPAPAKRENEAQRVERLLAEATAAKRQWDDLVRERQAI
QQRQDKGQPAYVGAVIELGHKRLDAVSKLEAAKGDQARAEQRMAARPSPLTDWATKLGHRLKVGQARREA
KRADQAFRGHPDYQRAVAWNTRNKADQARLARPAGRDAPQIDLEITEARARAEAAQRVADRAAADPRELL
RQMDAALLDRKNALAELPRDALADRQLAHDRETVRALRQQIDQPDRPSAEALAEILERHQMQARHWQGVA
EGVTRERTRRLLQERLRAQQALREAVEREQGIEDAQGYELARIEREERRIEQLLVDVDGFDQGKPKPLPA
LAEERQRLEEDRRRLDEVPSWAEEARAEQEQAQQHRPSPFRPW

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-201)


  Protein structure



No available structure.




Host bacterium

ID   7865 GenBank   NZ_KJ940992
Plasmid name   pZM1P1 Incompatibility group   -
Plasmid size   7793 bp Coordinate of oriT [Strand]   4211..4242 [+]
Host baterium   Pseudomonas sp. ZM1

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -