Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 107429 |
| Name | oriT_PP2  |
| Organism | Pseudomonas syringae pv. cerasicola strain CFBP 6110 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_LT985211 (74545..74718 [-], 174 nt) |
| oriT length | 174 nt |
| IRs (inverted repeats) | 79..87, 91..99 (CCAAAGGGG..CCCCTTTGG) 42..47, 56..61 (AAAAAG..CTTTTT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 174 nt
>oriT_PP2
ATCTCGAATTCGCTAAACAGGCACGTTACCGATTGTCTACAAAAAAGAGCTTCGCCTTTTTCGTAGCCAATCGACGTGCCAAAGGGGATACCCCTTTGGAACCCCGCAGAGCGGGAAAGCGTTGTCGTTGTTGGTTGTCGTCATTCAGGTGCCCTCAGGAGGTGATGTTGTGGC
ATCTCGAATTCGCTAAACAGGCACGTTACCGATTGTCTACAAAAAAGAGCTTCGCCTTTTTCGTAGCCAATCGACGTGCCAAAGGGGATACCCCTTTGGAACCCCGCAGAGCGGGAAAGCGTTGTCGTTGTTGGTTGTCGTCATTCAGGTGCCCTCAGGAGGTGATGTTGTGGC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 4967 | GenBank | WP_122232019 |
| Name | Relaxase_GWB21_RS01055_PP2 |
UniProt ID | _ |
| Length | 1257 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 1257 a.a. Molecular weight: 138801.57 Da Isoelectric Point: 9.5259
>WP_122232019.1 MULTISPECIES: LPD7 domain-containing protein [Pseudomonas syringae group]
MLIRVSGYNTGAQEYLEQGNKSGREFTRDELDHRLIIEGQLSLTRAIYESIPDYGQDRYLTFTLSFKEDT
VSPELLKSITTDFKNFFMHAYKPEEFNLYAEAHLPKMKTVTDRKTGEVIDRKPHIHIIIPRINLLSGNEA
NPVDVYKNHEKYFEAFQEHINQKYGLSSPRENVRADITDAASVLSRYKGDDFYGKNRQFKQELVKQVIER
GVTTRADFYALVAEHGETRIRNEGKDTEYISVKLPGDAKGTNLKDTIFQDDFIVRRELKKPPLEASVIQE
RLLAWPQRAREIKYVNKATPKFRKAYSEASPEDRVRLLAEREARFYQTYGESHDSVHTGQRQRDHQRSPA
ETAGRRTAAPADGLQDLSVSNVADHRQAGSARSRDGALLLPSDAHVHLGQSQPGGDSGLRPPVPGGGRGR
RNGSTAERGRGGSGPAAVSQEATGTATPAGATGRRRAGAGKPRNARVRAGRIIPPYAKNPHRVATIADIE
ERGRRLFDPLKKPSDNALVFYRAPSVTSMPKAATATATPGRSTAGRRPRTSDKPRPPRQWRPGSVVPPYA
KNPHRVATVADIEQRARMLFDPLKRPADKALVFKRASIKALTVNRQASTVAAYFTRQAQHNQIAPAHRRA
IRRIDQQYFALRRAVFSDQRLTRQDKAQLVSVLTFERLKAREQFHNPKPNIEVNLMGSAAIRNLLDDEKE
DPGFSISGARGPGPEGVRDRVKRVMDRFAKQIDPVAASERARDLSAKDLYTRKAKFSQNVHYLDKQTDKT
LFVDTGTTISMRRTGITEAGVSVALQLARERFGSTLTINGTAEFKKLVIEAVAKNGLDVHFTDKAMNQSL
AARRAELDIERGGQSIGPATDLPRHVDDSTRDVRDQADRMGVTVPIEALYGEGKTAEQVSQALATQLDTV
PEPERIAFVETVAITLGIPERGEPKGDQAFAQWQAQRAQPAADSAATATSEAQTRVATPSDAAPEPVSPT
ASTSPAPASPEAAKPARADDPDLQSPSELVRLEAQWRRDFPMSEADVRASDTVMGLRGEDHAVWIIATND
KTPEAAAMLTAYMENDSYREAFKASIVAAYKQVENSPKLIDDLDHLTAMAAQLVNEVEDRLFPAPQAATG
QTASARSKVIEGALIEHGEAPYQNKDTNQISYFVTLKPEGGKPRTVWGVGLEDAMKDSNLKQGDQVRLQD
LGTQPVVVQVIEEDGTVTDKTVNRREWSAQPVAPEREVAETTPKGQAAAAGTPELSSPDEEDGMSMD
MLIRVSGYNTGAQEYLEQGNKSGREFTRDELDHRLIIEGQLSLTRAIYESIPDYGQDRYLTFTLSFKEDT
VSPELLKSITTDFKNFFMHAYKPEEFNLYAEAHLPKMKTVTDRKTGEVIDRKPHIHIIIPRINLLSGNEA
NPVDVYKNHEKYFEAFQEHINQKYGLSSPRENVRADITDAASVLSRYKGDDFYGKNRQFKQELVKQVIER
GVTTRADFYALVAEHGETRIRNEGKDTEYISVKLPGDAKGTNLKDTIFQDDFIVRRELKKPPLEASVIQE
RLLAWPQRAREIKYVNKATPKFRKAYSEASPEDRVRLLAEREARFYQTYGESHDSVHTGQRQRDHQRSPA
ETAGRRTAAPADGLQDLSVSNVADHRQAGSARSRDGALLLPSDAHVHLGQSQPGGDSGLRPPVPGGGRGR
RNGSTAERGRGGSGPAAVSQEATGTATPAGATGRRRAGAGKPRNARVRAGRIIPPYAKNPHRVATIADIE
ERGRRLFDPLKKPSDNALVFYRAPSVTSMPKAATATATPGRSTAGRRPRTSDKPRPPRQWRPGSVVPPYA
KNPHRVATVADIEQRARMLFDPLKRPADKALVFKRASIKALTVNRQASTVAAYFTRQAQHNQIAPAHRRA
IRRIDQQYFALRRAVFSDQRLTRQDKAQLVSVLTFERLKAREQFHNPKPNIEVNLMGSAAIRNLLDDEKE
DPGFSISGARGPGPEGVRDRVKRVMDRFAKQIDPVAASERARDLSAKDLYTRKAKFSQNVHYLDKQTDKT
LFVDTGTTISMRRTGITEAGVSVALQLARERFGSTLTINGTAEFKKLVIEAVAKNGLDVHFTDKAMNQSL
AARRAELDIERGGQSIGPATDLPRHVDDSTRDVRDQADRMGVTVPIEALYGEGKTAEQVSQALATQLDTV
PEPERIAFVETVAITLGIPERGEPKGDQAFAQWQAQRAQPAADSAATATSEAQTRVATPSDAAPEPVSPT
ASTSPAPASPEAAKPARADDPDLQSPSELVRLEAQWRRDFPMSEADVRASDTVMGLRGEDHAVWIIATND
KTPEAAAMLTAYMENDSYREAFKASIVAAYKQVENSPKLIDDLDHLTAMAAQLVNEVEDRLFPAPQAATG
QTASARSKVIEGALIEHGEAPYQNKDTNQISYFVTLKPEGGKPRTVWGVGLEDAMKDSNLKQGDQVRLQD
LGTQPVVVQVIEEDGTVTDKTVNRREWSAQPVAPEREVAETTPKGQAAAAGTPELSSPDEEDGMSMD
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 5168 | GenBank | WP_099315801 |
| Name | t4cp2_GWB21_RS01100_PP2 |
UniProt ID | _ |
| Length | 553 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 553 a.a. Molecular weight: 61919.58 Da Isoelectric Point: 6.3374
>WP_099315801.1 MULTISPECIES: type IV secretory system conjugative DNA transfer family protein [Pseudomonas syringae group]
MARAKSKPISPDNPQERIEEHPAFLLGKHPTEDSFLASYGQQFVMLAAPPGSMKGVSAVIPNLLSYPDSM
VVNDPKFENWDITSGFRASAGHKVYRFSPERLETHRWNPVSAISRDPLYRLGDIRTLARVLFVSDNPKNQ
EWYNKAGNVFSSILLYLMETPAMPCTLPQTYEIGSLGTGMGTWAQQVIELRSTGPNALTVETLRELNGVY
EASKNKSSGWSTTVDIVRDVLSVYAEKTVAWAVSGDDIDFAKMREEKTTVYFSVTEGNLKKYGPLMNLFF
TQAIRLNSKVIPEQGGHCADGTLRYKYQLALMMDEFAIMGRMEIMETAPALTRGAGLRFFLIFQGKDQIR
AIYGEEAANGIMKAIHNEIVFAPGDIKLAEEYSRRLGNTTVRVHNQSLNRQKHEIGARGQTDSYSEQPRP
LMLPQEVNELPFDKQLIFVQGNRQTEPMKILARKIIYFEEEVFKARKNMTPPPLPVGDATKIDALTVPVR
TVEAKVAVADTKPMQAEQRQRWNPRDTNAQAIEVAKAATDKAQPVEVEPDPEPAQADDTPETM
MARAKSKPISPDNPQERIEEHPAFLLGKHPTEDSFLASYGQQFVMLAAPPGSMKGVSAVIPNLLSYPDSM
VVNDPKFENWDITSGFRASAGHKVYRFSPERLETHRWNPVSAISRDPLYRLGDIRTLARVLFVSDNPKNQ
EWYNKAGNVFSSILLYLMETPAMPCTLPQTYEIGSLGTGMGTWAQQVIELRSTGPNALTVETLRELNGVY
EASKNKSSGWSTTVDIVRDVLSVYAEKTVAWAVSGDDIDFAKMREEKTTVYFSVTEGNLKKYGPLMNLFF
TQAIRLNSKVIPEQGGHCADGTLRYKYQLALMMDEFAIMGRMEIMETAPALTRGAGLRFFLIFQGKDQIR
AIYGEEAANGIMKAIHNEIVFAPGDIKLAEEYSRRLGNTTVRVHNQSLNRQKHEIGARGQTDSYSEQPRP
LMLPQEVNELPFDKQLIFVQGNRQTEPMKILARKIIYFEEEVFKARKNMTPPPLPVGDATKIDALTVPVR
TVEAKVAVADTKPMQAEQRQRWNPRDTNAQAIEVAKAATDKAQPVEVEPDPEPAQADDTPETM
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 7864 | GenBank | NZ_LT985211 |
| Plasmid name | PP2 | Incompatibility group | - |
| Plasmid size | 94021 bp | Coordinate of oriT [Strand] | 74545..74718 [-] |
| Host baterium | Pseudomonas syringae pv. cerasicola strain CFBP 6110 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |